Showing metabocard for heptanedioic acid (MMDBc0054503)

Microbial
Record Information
Version2.0
StatusDetected and Quantified
Creation Date2022-06-05 23:15:53 UTC
Update Date2025-10-07 16:08:33 UTC
Metabolite IDMMDBc0054503
Metabolite Identification
Common Nameheptanedioic acid
DescriptionHeptanedioic acid is a dicarboxylic acid belonging to the class of carboxylic acids. Its chemical structure features a seven-carbon chain with carboxyl groups at both ends, making it an α,ω-dicarboxylic acid. This compound is involved in various biochemical pathways, including its role as a precursor in the biosynthesis of biotin, providing seven of the ten carbon atoms required for its structure, including those of the valeryl side chain (PMID:33154364 ). Additionally, heptanedioic acid derivatives have been isolated from microbial sources, indicating its potential significance in natural product chemistry (PMID:30807789 ). It has also been studied for its interactions in porphyrin chemistry, where it affects solubility and rotational dynamics within molecular structures (PMID:39704637 ). Furthermore, it serves as a crosslinker in eco-friendly organic-inorganic hybrid membranes, highlighting its versatility in material science (PMID:31426986 ). Notably, meso-diaminopimelic acid, a derivative of heptanedioic acid, is crucial for the structural integrity of bacterial cell walls (PMID:29885593 ). These findings underscore the multifaceted roles of heptanedioic acid in both chemistry and biology.
Structure
MOLSDFPDBSMILESInChI

MOL for #<Metabolite:0x00007f9acd78f9f0>


  Mrv1533004261518572D          

 11 10  0  0  0  0            999 V2000
    5.8559    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1414    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4270    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9980    2.5559    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125    1.3184    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    6.5704    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2849    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9993    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7138    2.5559    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.9993    1.3184    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  1  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
M  CHG  2   6  -1  11  -1
M  END
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3D MOL for #<Metabolite:0x00007f9acd78f9f0>

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3D SDF for #<Metabolite:0x00007f9acd78f9f0>

  Mrv1533004261518572D          

 11 10  0  0  0  0            999 V2000
    5.8559    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1414    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4270    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9980    2.5559    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125    1.3184    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    6.5704    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2849    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9993    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7138    2.5559    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.9993    1.3184    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  1  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
M  CHG  2   6  -1  11  -1
M  END
> <DATABASE_ID>
MMDBc0054503

> <DATABASE_NAME>
MIME

> <SMILES>
[O-]C(=O)CCCCCC([O-])=O

> <INCHI_IDENTIFIER>
InChI=1S/C7H12O4/c8-6(9)4-2-1-3-5-7(10)11/h1-5H2,(H,8,9)(H,10,11)/p-2

> <INCHI_KEY>
WLJVNTCWHIRURA-UHFFFAOYSA-L

> <FORMULA>
C7H10O4

> <MOLECULAR_WEIGHT>
158.154

> <EXACT_MASS>
158.059005962

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
21

> <JCHEM_AVERAGE_POLARIZABILITY>
15.397229119178206

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
-2

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
heptanedioate

> <ALOGPS_LOGP>
0.76

> <JCHEM_LOGP>
0.9352230276666667

> <ALOGPS_LOGS>
-0.92

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
4.8101291244285145

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.045044284282043

> <JCHEM_POLAR_SURFACE_AREA>
80.25999999999999

> <JCHEM_REFRACTIVITY>
59.0142

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.31e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
pimelate

> <JCHEM_VEBER_RULE>
0

$$$$

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3D-SDF for #<Metabolite:0x00007f9acd78f9f0>
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PDB for #<Metabolite:0x00007f9acd78f9f0>
HEADER    PROTEIN                                 26-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   26-APR-15         0                                  
HETATM    1  C   UNK     0      10.931   4.771   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.597   4.001   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       8.264   4.771   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.930   4.001   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       5.596   4.771   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0       6.930   2.461   0.000  0.00  0.00           O-1
HETATM    7  C   UNK     0      12.265   4.001   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      13.598   4.771   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      14.932   4.001   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      16.266   4.771   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0      14.932   2.461   0.000  0.00  0.00           O-1
CONECT    1    2    7                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4                                                            
CONECT    7    1    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9                                                            
MASTER        0    0    0    0    0    0    0    0   11    0   20    0
END

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3D PDB for #<Metabolite:0x00007f9acd78f9f0>
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SMILES for #<Metabolite:0x00007f9acd78f9f0>
[O-]C(=O)CCCCCC([O-])=O
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INCHI for #<Metabolite:0x00007f9acd78f9f0>
InChI=1S/C7H12O4/c8-6(9)4-2-1-3-5-7(10)11/h1-5H2,(H,8,9)(H,10,11)/p-2
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Synonyms
ValueSource
HeptanedioateChEBI
Heptanedioic acidGenerator
Pimelic acid(2-)Generator
6-CarboxyhexanoateMetaCyc
Pimelic acidMetaCyc
6-Carboxyhexanoic acidGenerator
PimelateGenerator
Molecular FormulaC7H10O4
Average Mass158.154
Monoisotopic Mass158.059005962
IUPAC Nameheptanedioate
Traditional Namepimelate
CAS Registry NumberNot Available
SMILES
[O-]C(=O)CCCCCC([O-])=O
InChI Identifier
InChI=1S/C7H12O4/c8-6(9)4-2-1-3-5-7(10)11/h1-5H2,(H,8,9)(H,10,11)/p-2
InChI KeyWLJVNTCWHIRURA-UHFFFAOYSA-L