MiMeDB: Showing metabocard for 9Z-Nonadecenoic acid (MMDBc0060341)

Microbial

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2023-02-09 19:24:12 UTC

Update Date

2025-10-07 20:47:37 UTC

Metabolite ID

MMDBc0060341

Metabolite Identification

Common Name

9Z-Nonadecenoic acid

Description

9Z-Nonadecenoic acid is a fatty acid belonging to the class of unsaturated fatty acids. There is limited literature available on this metabolite, indicating that further research may be necessary to fully understand its biological significance and potential implications.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652304102103412D          

 21 20  0  0  0  0            999 V2000
   -1.2888    5.0309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5743    4.6184    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1401    5.0309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8546    4.6184    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5691    5.0309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2836    4.6184    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2836    3.7934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5691    3.3809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5691    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2836    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9980    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4270    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1414    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8559    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5704    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2849    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9993    2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7138    2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0033    4.6184    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2888    5.8559    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
  1 20  2  0  0  0  0
  1 21  1  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0060341

> <DATABASE_NAME>
MIME

> <SMILES>
CCCCCCCCC\C=C/CCCCCCCC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C19H36O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19(20)21/h10-11H,2-9,12-18H2,1H3,(H,20,21)/b11-10-

> <INCHI_KEY>
YOKHLRHWEXTWJR-KHPPLWFESA-N

> <FORMULA>
C19H36O2

> <MOLECULAR_WEIGHT>
296.495

> <EXACT_MASS>
296.271530399

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
57

> <JCHEM_AVERAGE_POLARIZABILITY>
39.21017298659547

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(9Z)-nonadec-9-enoic acid

> <ALOGPS_LOGP>
8.06

> <JCHEM_LOGP>
7.228367115999999

> <ALOGPS_LOGS>
-6.60

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.988167283903808

> <JCHEM_POLAR_SURFACE_AREA>
37.3

> <JCHEM_REFRACTIVITY>
92.00319999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
16

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
7.39e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(9Z)-nonadec-9-enoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 10-APR-21   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   10-APR-21         0                                  
HETATM    1  C   UNK     0      -2.406   9.391   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.072   8.621   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.262   9.391   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.595   8.621   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.929   9.391   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.263   8.621   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.263   7.081   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.929   6.311   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.929   4.771   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.263   4.001   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.596   4.771   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       6.930   4.001   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       8.264   4.771   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       9.597   4.001   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      10.931   4.771   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      12.265   4.001   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      13.598   4.771   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      14.932   4.001   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      16.266   4.771   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      -3.739   8.621   0.000  0.00  0.00           O+0
HETATM   21  O   UNK     0      -2.406  10.931   0.000  0.00  0.00           O+0
CONECT    1    2   20   21                                                  
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18                                                            
CONECT   20    1                                                            
CONECT   21    1                                                            
MASTER        0    0    0    0    0    0    0    0   21    0   40    0
END

Synonyms

Value	Source
19:1(9Z)	ChEBI
9Z-Nonadecenoic acid	ChEBI
C19:1N-10	ChEBI
9Z-Nonadecenoate	Generator
(9Z)-Nonadec-9-enoate	Generator
cis-9-Nonadecenoate	HMDB

Molecular Formula

C₁₉H₃₆O₂

Average Mass

296.495

Monoisotopic Mass

296.271530399

IUPAC Name

(9Z)-nonadec-9-enoic acid

Traditional Name

(9Z)-nonadec-9-enoic acid

CAS Registry Number

Not Available

SMILES

CCCCCCCCC\C=C/CCCCCCCC(O)=O

InChI Identifier

InChI=1S/C19H36O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19(20)21/h10-11H,2-9,12-18H2,1H3,(H,20,21)/b11-10-

InChI Key

YOKHLRHWEXTWJR-KHPPLWFESA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as long-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 13 and 21 carbon atoms.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acids and conjugates

Direct Parent

Long-chain fatty acids

Alternative Parents

Substituents

Long-chain fatty acid
Unsaturated fatty acid
Straight chain fatty acid
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

long-chain fatty acid (CHEBI:78443 )
monounsaturated fatty acid (CHEBI:78443 )
straight-chain fatty acid (CHEBI:78443 )
Unsaturated fatty acids (LMFA01030886 )

Functional Ontology

Not Available

Physical Properties

State

Not Available

Predicted Properties

Property	Value	Source
Water Solubility	7.4e-05 g/L	ALOGPS
logP	8.06	ALOGPS
logP	7.23	ChemAxon
logS	-6.6	ALOGPS
pKa (Strongest Acidic)	4.99	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	37.3 Å²	ChemAxon
Rotatable Bond Count	16	ChemAxon
Refractivity	92 m³·mol⁻¹	ChemAxon
Polarizability	39.21 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_1_1) - 70eV, Positive	Not Available	2022-08-08	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	Not Available	2022-08-10	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	Not Available	2022-08-10	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	Not Available	2022-08-10	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	Not Available	2022-08-10	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	Not Available	2022-08-10	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	Not Available	2022-08-10	View Spectrum

Chromatographic Retention Times and Retention Indices

Retention Times

Chromatography Type	Technique	Column	Deposition Date	Retention Time (s)
Liquid Chromatography	HILIC	Waters Acquity UPLC-BEH Amide column (eluted)	2025-10-24	183.5
Liquid Chromatography	HILIC	Accucore 150 Amide HILIC (eluted)	2025-10-24	39.0
Liquid Chromatography	Reversed-phase	Hypersil Gold 1.9 µm C18 (eluted)	2025-10-24	692.2
Liquid Chromatography	Reversed-phase	Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) (eluted)	2025-10-24	912.2
Liquid Chromatography	Reversed-phase	XBridge C18 3.5u 2.1x50 mm (eluted)	2025-10-24	1124.3
Liquid Chromatography	Reversed-phase	Ascentis Express C18 (eluted)	2025-10-24	713.3
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (retained)	2025-10-24	3287.5
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (void)	2025-10-24	98.7
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC (eluted)	2025-10-24	469.0
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-24	893.3
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (void)	2025-10-24	662.5
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-24	412.3
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-24	278.0
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (void)	2025-10-24	8.2
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-24	741.7
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-24	642.1
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-24	542.3
Liquid Chromatography	Reversed-phase	Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex (eluted)	2025-10-24	2023.2
Liquid Chromatography	Reversed-phase	Waters Atlantis T3 (2.1 x 150 mm, 5 um) (eluted)	2025-10-24	2412.7

Retention Indices

Chromatography Type	Peak Label	SMILES	Stationary Phase	Deposition Date	Retention Index
Gas Chromatography	9Z-Nonadecenoic acid_TMS_1	CCCCCCCCC/C=C\CCCCCCCC(=O)O[Si](C)(C)C	standard non polar	2025-10-24	2450.57
Gas Chromatography	9Z-Nonadecenoic acid_TMS_1	CCCCCCCCC/C=C\CCCCCCCC(=O)O[Si](C)(C)C	standard polar	2025-10-24	2253.69

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Not Available

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0038510	PE(10:0/19:1(9Z))	9Z-Nonadecenoic acid	Lipid droplet phospholipase 1	Hydrolysis	RHEA	34755880
MMDBr0038511	PE(12:0/19:1(9Z))	9Z-Nonadecenoic acid	Lipid droplet phospholipase 1	Hydrolysis	RHEA	34755880
MMDBr0038515	PE(14:0/19:1(9Z))	9Z-Nonadecenoic acid	Lipid droplet phospholipase 1	Hydrolysis	RHEA	34755880
MMDBr0038516	PE(15:0/19:1(9Z))	9Z-Nonadecenoic acid	Lipid droplet phospholipase 1	Hydrolysis	RHEA	34755880
MMDBr0038524	PE(16:0/19:1(9Z))	9Z-Nonadecenoic acid	Lipid droplet phospholipase 1	Hydrolysis	RHEA	34755880
MMDBr0038528	PE(16:1(9Z)/19:1(9Z))	9Z-Nonadecenoic acid	Lipid droplet phospholipase 1	Hydrolysis	RHEA	34755880
MMDBr0038535	PE(18:0/19:1(9Z))	9Z-Nonadecenoic acid	Lipid droplet phospholipase 1	Hydrolysis	RHEA	34755880
MMDBr0038540	PE(18:1(9Z)/19:1(9Z))	9Z-Nonadecenoic acid	Lipid droplet phospholipase 1	Hydrolysis	RHEA	34755880
MMDBr0038555	PE(19:1(9Z)/19:1(9Z))	9Z-Nonadecenoic acid	Lipid droplet phospholipase 1	Hydrolysis	RHEA	34755880
MMDBr0039813	DG(19:1(9Z)/10:0/0:0)	9Z-Nonadecenoic acid	Carboxylesterase Culp1	Hydrolysis	RHEA	34755880
MMDBr0039814	DG(19:1(9Z)/12:0/0:0)	9Z-Nonadecenoic acid	Carboxylesterase Culp1	Hydrolysis	RHEA	34755880
MMDBr0039815	DG(19:1(9Z)/14:0/0:0)	9Z-Nonadecenoic acid	Carboxylesterase Culp1	Hydrolysis	RHEA	34755880
MMDBr0039816	DG(19:1(9Z)/15:0/0:0)	9Z-Nonadecenoic acid	Carboxylesterase Culp1	Hydrolysis	RHEA	34755880
MMDBr0039817	DG(19:1(9Z)/16:0/0:0)	9Z-Nonadecenoic acid	Carboxylesterase Culp1	Hydrolysis	RHEA	34755880
MMDBr0039818	DG(19:1(9Z)/16:1(9Z)/0:0)	9Z-Nonadecenoic acid	Carboxylesterase Culp1	Hydrolysis	RHEA	34755880
MMDBr0039819	DG(19:1(9Z)/18:0/0:0)	9Z-Nonadecenoic acid	Carboxylesterase Culp1	Hydrolysis	RHEA	34755880
MMDBr0039820	DG(19:1(9Z)/18:1(9Z)/0:0)	9Z-Nonadecenoic acid	Carboxylesterase Culp1	Hydrolysis	RHEA	34755880
MMDBr0039821	DG(19:1(9Z)/19:1(9Z)/0:0)	9Z-Nonadecenoic acid	Carboxylesterase Culp1	Hydrolysis	RHEA	34755880

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

HMDB0340925

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

31150573

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

14275216

PDB ID

Not Available

ChEBI ID

78443

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

Showing metabocard for 9Z-Nonadecenoic acid (MMDBc0060341)

MOL for #<Metabolite:0x00007f9acc25ab48>

3D MOL for #<Metabolite:0x00007f9acc25ab48>

3D SDF for #<Metabolite:0x00007f9acc25ab48>

3D-SDF for #<Metabolite:0x00007f9acc25ab48>

PDB for #<Metabolite:0x00007f9acc25ab48>

3D PDB for #<Metabolite:0x00007f9acc25ab48>

SMILES for #<Metabolite:0x00007f9acc25ab48>

INCHI for #<Metabolite:0x00007f9acc25ab48>

Structure for #<Metabolite:0x00007f9acc25ab48>

3D Structure for #<Metabolite:0x00007f9acc25ab48>