| MMDBm0002424 | Pyrococcus horikoshii | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0002690 | Thermococcus kodakarensis | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0002425 | Pyrococcus furiosus | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001198 | Aeromonas hydrophila | Eubacteria | Proteobacteria | Facultative aerobe |
| MMDBm0001587 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002781 | Yersinia enterocolitica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001891 | Mycobacterium bovis | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001191 | Actinobacillus pleuropneumoniae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002782 | Yersinia pestis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002605 | Streptococcus suis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001571 | Enterobacter sp. 638 | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002710 | Thermotoga petrophila | Eubacteria | Thermotogae | Anaerobe |
| MMDBm0001894 | Mycobacterium tuberculosis | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001660 | Haemophilus influenzae | Eubacteria | Proteobacteria | Aerobe; facultative anaerobe |
| MMDBm0001661 | Haemophilus influenzae | Eubacteria | Proteobacteria | Aerobe; facultative anaerobe |
| MMDBm0002475 | Roseiflexus sp. RS-1 | Eubacteria | Chloroflexi | Aerobe; anaerobe |
| MMDBm0001744 | Limosilactobacillus reuteri | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000116 | beijerinckii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001192 | Actinobacillus succinogenes | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002783 | pseudotuberculosis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001501 | Cronobacter sakazakii | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0610847 | Vibrio campbellii | Eubacteria | Proteobacteria | |
| MMDBm0002476 | Roseiflexus castenholzii | Eubacteria | Chloroflexi | Aerobe; anaerobe |
| MMDBm0001588 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001589 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001450 | Citrobacter koseri | Eubacteria | Proteobacteria | Facultatively anaerobe |
| MMDBm0002506 | Serratia proteamaculans | Eubacteria | Proteobacteria | Facultative |
| MMDBm0547793 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002046 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002784 | Yersinia pestis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001445 | Chloroflexus aurantiacus | Eubacteria | Chloroflexi | Anaerobe |
| MMDBm0001193 | Actinobacillus pleuropneumoniae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001590 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002785 | pseudotuberculosis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002712 | Thermotoga sp. RQ2 | Eubacteria | Thermotogae | Anaerobe |
| MMDBm0000167 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001609 | Exiguobacterium sibiricum | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0001746 | Limosilactobacillus reuteri | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001747 | Limosilactobacillus fermentum | Eubacteria | Firmicutes | Facultative anaerobe; microaerophile |
| MMDBm0002786 | pseudotuberculosis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002535 | Shigella boydii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001576 | tasmaniensis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001194 | Actinobacillus pleuropneumoniae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001748 | Lactobacillus casei | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002387 | Proteus mirabilis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002495 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002496 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0550587 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0550377 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001210 | Vibrio fischeri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002498 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002499 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0549171 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002500 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001592 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001593 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002707 | Thermosipho africanus | Eubacteria | Thermotogae | Anaerobe |
| MMDBm0001600 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001596 | Escherichia fergusonii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001597 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001598 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001599 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001595 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001601 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001594 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001662 | Haemophilus parasuis | Eubacteria | Proteobacteria | Aerobe; facultative anaerobe |
| MMDBm0001446 | Chloroflexus aggregans | Eubacteria | Chloroflexi | Facultative |
| MMDBm0002713 | Thermotoga neapolitana | Eubacteria | Thermotogae | Microaerophilic |
| MMDBm0001447 | Chloroflexus sp. Y-400-fl | Eubacteria | Chloroflexi | |
| MMDBm0550426 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001899 | Mycobacterium bovis | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0002722 | Tolumonas auensis | Eubacteria | Proteobacteria | Facultative |
| MMDBm0001602 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002723 | Treponema pallidum | Eubacteria | Spirochaetes | Anaerobe |
| MMDBm0000493 | Lactobacillus casei | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000580 | Thermotoga neapolitana | Eubacteria | Thermotogae | Microaerophilic |
| MMDBm0541555 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0542442 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000528 | Streptomyces lividans | Eubacteria | Actinobacteria | |
| MMDBm0002492 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001658 | Haemophilus influenzae | Eubacteria | Proteobacteria | Aerobe; facultative anaerobe |
| MMDBm0001248 | Bacillus subtilis | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0001963 | Thermotoga maritima | Eubacteria | Thermotogae | Anaerobe |
| MMDBm0002345 | Pasteurella multocida | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0570591 | Actinobacillus pleuropneumoniae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002590 | Streptococcus mutans | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001882 | Mycobacterium tuberculosis | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001880 | Mycobacterium tuberculosis | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0000496 | Lactobacillus helveticus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001741 | Lactobacillus casei | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000282 | Streptococcus thermophilus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001740 | brevis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001477 | Clostridium perfringens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0002534 | Shigella flexneri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001586 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000132 | Clostridium perfringens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0002780 | Yersinia pestis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002779 | Yersinia pestis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000169 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001736 | Ligilactobacillus salivarius | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002533 | Shigella boydii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002532 | Shigella dysenteriae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002531 | Shigella sonnei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002564 | Staphylococcus saprophyticus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0548594 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001209 | Vibrio fischeri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000281 | Streptococcus thermophilus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0550379 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001284 | succiniciproducens | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0002778 | pseudotuberculosis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002742 | Vibrio vulnificus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001884 | Mycobacterium bovis | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001575 | Enterococcus faecalis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000368 | Shigella flexneri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002741 | Vibrio parahaemolyticus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001734 | Lactiplantibacillus plantarum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001455 | Clostridium tetani | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0002740 | Vibrio vulnificus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002586 | Streptococcus pneumoniae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000162 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001358 | Thermoanaerobacter tengcongensis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000185 | Fusobacterium nucleatum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0001454 | Clostridium perfringens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0550758 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0562461 | Yersinia pestis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000114 | acetobutylicum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0002585 | Streptococcus pneumoniae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002635 | Streptomyces coelicolor | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0000028 | Bacillus halodurans | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0002739 | Vibrio cholerae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001762 | Lactococcus lactis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002573 | Staphylococcus carnosus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001764 | Lactococcus lactis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000280 | Streptococcus thermophilus | Eubacteria | Firmicutes | |
| MMDBm0095354 | Candida parapsilosis | Fungi | Ascomycota | |
| MMDBm0098378 | Saccharomyces cerevisiae | Fungi | Ascomycota | |
| MMDBm0098142 | Kluyveromyces lactis | Fungi | Ascomycota | |
| MMDBm0000584 | Candida albicans | Fungi | Ascomycota | |
| MMDBm0095341 | Candida maltosa | Fungi | Ascomycota | |
| MMDBm0101577 | Schizosaccharomyces pombe | Fungi | Ascomycota | |