| MMDBm0000096 | Brevibacillus borstelensis AK1 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH | 
| MMDBm0000097 | Brevibacillus brevis NBRC 100599 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH | 
| MMDBm0000118 | Enterocloster bolteae | Eubacteria | Firmicutes | Human Feces | Microbial culture | CMMC-Kb | 
| MMDBm0000157 | Enterococcus hirae ATCC 9790 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH | 
| MMDBm0000207 | Lactobacillus reuteri | Eubacteria | Firmicutes | Human  | Microbial culture | CMMC-Kb | 
| MMDBm0000268 | Staphylococcus | Eubacteria | Firmicutes | Human  | Microbial culture | CMMC-Kb | 
| MMDBm0000483 | Clostridium innocuum | Eubacteria | Firmicutes | Human Feces | Microbial culture | CMMC-Kb | 
| MMDBm0000494 | Weissella confusa | Eubacteria | Firmicutes | Human  | Microbial culture | CMMC-Kb | 
| MMDBm0000498 | Lactobacillus plantarum | Eubacteria | Firmicutes | Human  | Microbial culture | CMMC-Kb | 
| MMDBm0000502 | Lactobacillus animalis | Eubacteria | Firmicutes | Human  | Microbial culture | CMMC-Kb | 
| MMDBm0000507 | Lactobacillus salivarius | Eubacteria | Firmicutes | Human  | Microbial culture | CMMC-Kb | 
| MMDBm0000680 | Veillonella atypica | Eubacteria | Firmicutes | Human  | Microbial culture | CMMC-Kb | 
| MMDBm0000681 | Veillonella dispar | Eubacteria | Firmicutes | Human  | Microbial culture | CMMC-Kb | 
| MMDBm0000802 | Lactobacillus mucosae | Eubacteria | Firmicutes | Human Feces | Microbial culture | CMMC-Kb | 
| MMDBm0001034 | Bacillus amyloliquefaciens | Eubacteria | Firmicutes | Human  | Microbial culture | CMMC-Kb | 
| MMDBm0001044 | Blautia obeum | Eubacteria | Firmicutes | Human Stool | Microbial culture | CMMC-Kb | 
| MMDBm0001055 | Dorea formicigenerans | Eubacteria | Firmicutes | Human Stool | Microbial culture | CMMC-Kb | 
| MMDBm0001069 | Lactobacillus acidophilus | Eubacteria | Firmicutes | Human  | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available | 
| MMDBm0001090 | Veillonella parvula | Eubacteria | Firmicutes | Human  | Microbial culture | CMMC-Kb | 
| MMDBm0001259 | Bacillus amyloliquefaciens FZB42 | Eubacteria | Firmicutes | Not Available | Microbial culture | CMMC-Kb | 
| MMDBm0767930 | Paenibacillus graminis | Eubacteria | Firmicutes | Not Available | Metabolic reconstruction | VMH | 
| MMDBm0767931 | Paenibacillus graminis RSA19 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH | 
| MMDBm0786739 | Enterococcus avium ATCC 14025 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH | 
| MMDBm0786748 | Enterococcus casseliflavus ATCC 12755 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH | 
| MMDBm0787501 | Enterococcus gallinarum EG2 | Eubacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |