MiMeDB: Showing metabocard for Xylulose 5-phosphate (MMDBc0029819)

Microbial

Plant

Animal

Pharmaceutical

Xenobiotic

Record Information

Version

2.0

Status

Detected and Quantified

Creation Date

2021-11-17 23:43:01 UTC

Update Date

2024-10-15 17:07:05 UTC

Metabolite ID

MMDBc0029819

Metabolite Identification

Common Name

Xylulose 5-phosphate

Description

Xylulose 5-phosphate (Xu-5-P) is a metabolite of the hexose monophosphate pathway that activates protein phosphatase 2A to mediate the acute effects of carbohydrate feeding on the glycolytic pathway, as well as the coordinate long-term control of the enzymes required for fatty acid and triglyceride synthesis. Xu-5-P is the signal for the coordinated control of lipogenesis. Feeding carbohydrates to cells causes levels of glucose, Glucose-6-phosphate (Glc-6-P), and Fructose-6-phosphate (Fru-6-P) to rise. Elevation of Fru-6-P leads to elevation of Xu-5-P in reactions catalyzed by the near-equilibrium isomerases of the nonoxidative portion of the hexose monophosphate pathway (ribulose 5-phosphate (Ru5P) epimerase [EC 5.1.3.1], ribose 5-phosphate (Rib5P) isomerase [EC 5.3.1.6], transaldolase [EC 2.2.1.2], and transketolase [EC 2.2.1.1]). The elevation of Xu-5-P is the coordinating signal that both acutely activates phosphofructokinase [PFK; EC 2.7.1.11] in glycolysis and will increase transcription of the genes for the enzymes of lipogenesis, the hexose monophosphate shunt, and glycolysis, all of which are required for the de novo synthesis of fat. (PMID 12721358 )

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv1652309042000132D          

 14 13  0  0  1  0            999 V2000
    2.9980   -2.5559    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7125   -2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4270   -2.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4270   -3.3809    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1414   -2.1434    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.1414   -1.3184    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8559   -2.5559    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.8559   -3.3809    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.5704   -2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2849   -2.5559    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.9993   -2.1434    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    8.7138   -1.7309    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.4118   -2.8579    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.5868   -1.4289    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  1  0  0  0
  5  7  1  0  0  0  0
  7  8  1  1  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
 11 14  2  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0029819

> <DATABASE_NAME>
MIME

> <SMILES>
OCC(=O)[C@@H](O)[C@H](O)COP(O)(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C5H11O8P/c6-1-3(7)5(9)4(8)2-13-14(10,11)12/h4-6,8-9H,1-2H2,(H2,10,11,12)/t4-,5-/m1/s1

> <INCHI_KEY>
FNZLKVNUWIIPSJ-RFZPGFLSSA-N

> <FORMULA>
C5H11O8P

> <MOLECULAR_WEIGHT>
230.1098

> <EXACT_MASS>
230.01915384

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
25

> <JCHEM_AVERAGE_POLARIZABILITY>
18.05369731874536

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
{[(2R,3S)-2,3,5-trihydroxy-4-oxopentyl]oxy}phosphonic acid

> <ALOGPS_LOGP>
-1.81

> <JCHEM_LOGP>
-2.7602629813333333

> <ALOGPS_LOGS>
-0.95

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
6.504370847667953

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.4785529591465414

> <JCHEM_PKA_STRONGEST_BASIC>
-3.3276267100529333

> <JCHEM_POLAR_SURFACE_AREA>
144.52

> <JCHEM_REFRACTIVITY>
42.472199999999994

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.61e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
ribulose-5-phosphate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-20         0                                  
HETATM    1  O   UNK     0       5.596  -4.771   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       6.930  -4.001   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       8.264  -4.771   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       8.264  -6.311   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       9.597  -4.001   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       9.597  -2.461   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0      10.931  -4.771   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      10.931  -6.311   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      12.265  -4.001   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      13.598  -4.771   0.000  0.00  0.00           O+0
HETATM   11  P   UNK     0      14.932  -4.001   0.000  0.00  0.00           P+0
HETATM   12  O   UNK     0      16.266  -3.231   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0      15.702  -5.335   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0      14.162  -2.667   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   13   14                                             
CONECT   12   11                                                            
CONECT   13   11                                                            
CONECT   14   11                                                            
MASTER        0    0    0    0    0    0    0    0   14    0   26    0
END

Synonyms

Value	Source
5-O-Phosphono-D-threo-pentos-2-ulose	ChEBI
5-O-Phosphono-D-xylulose	ChEBI
D-Xylulose-5-phosphate	ChEBI
D-Xylulose-5-phosphoric acid	Generator
Xylulose 5-phosphoric acid	Generator
D-Xylulose 5-phosphate	HMDB
D-Xylulose 5-PO4	HMDB
D-Xylulose-5-P	HMDB
Xu-5-P	HMDB
Xylulose-P	HMDB
Xylulose-phosphate	HMDB
Xylulose-5-phosphate	MeSH, HMDB
Xylulose-5-phosphate, (D)-isomer	MeSH, HMDB
Xylulose 5-phosphate	HMDB
keto-D-Xylulose 5-phosphate	HMDB

Molecular Formula

C₅H₁₁O₈P

Average Mass

230.1098

Monoisotopic Mass

230.01915384

IUPAC Name

{[(2R,3S)-2,3,5-trihydroxy-4-oxopentyl]oxy}phosphonic acid

Traditional Name

ribulose-5-phosphate

CAS Registry Number

4212-65-1

SMILES

OCC(=O)[C@@H](O)[C@H](O)COP(O)(O)=O

InChI Identifier

InChI=1S/C5H11O8P/c6-1-3(7)5(9)4(8)2-13-14(10,11)12/h4-6,8-9H,1-2H2,(H2,10,11,12)/t4-,5-/m1/s1

InChI Key

FNZLKVNUWIIPSJ-RFZPGFLSSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pentose phosphates. These are carbohydrate derivatives containing a pentose substituted by one or more phosphate groups.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Pentose phosphates

Alternative Parents

Substituents

Pentose phosphate
Pentose-5-phosphate
Monosaccharide phosphate
Monoalkyl phosphate
Acyloin
Beta-hydroxy ketone
Organic phosphoric acid derivative
Alkyl phosphate
Phosphoric acid ester
Alpha-hydroxy ketone
Ketone
Secondary alcohol
Polyol
Hydrocarbon derivative
Organic oxide
Carbonyl group
Alcohol
Primary alcohol
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

xylulose 5-phosphate (CHEBI:16332 )

Functional Ontology

Not Available

Physical Properties

State

Solid

Predicted Properties

Property	Value	Source
Water Solubility	26.1 g/L	ALOGPS
logP	-1.8	ALOGPS
logP	-2.8	ChemAxon
logS	-0.95	ALOGPS
pKa (Strongest Acidic)	1.48	ChemAxon
pKa (Strongest Basic)	-3.3	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	144.52 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	42.47 m³·mol⁻¹	ChemAxon
Polarizability	18.05 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, Positive	splash10-0592-9800000000-d336b0e2eff1402939d8	2016-09-22	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (3 TMS) - 70eV, Positive	splash10-0a4i-9023200000-1dd7d8e1f64921beb234	2017-10-06	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_1_1) - 70eV, Positive	Not Available	2021-11-06	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_1_2) - 70eV, Positive	Not Available	2021-11-06	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_1_3) - 70eV, Positive	Not Available	2021-11-06	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_1_4) - 70eV, Positive	Not Available	2021-11-06	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_1_5) - 70eV, Positive	Not Available	2021-11-06	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_1_6) - 70eV, Positive	Not Available	2021-11-06	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_1) - 70eV, Positive	Not Available	2021-11-06	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_2) - 70eV, Positive	Not Available	2021-11-06	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_3) - 70eV, Positive	Not Available	2021-11-06	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_4) - 70eV, Positive	Not Available	2021-11-06	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_5) - 70eV, Positive	Not Available	2021-11-06	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_6) - 70eV, Positive	Not Available	2021-11-06	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_7) - 70eV, Positive	Not Available	2021-11-06	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_8) - 70eV, Positive	Not Available	2021-11-06	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_9) - 70eV, Positive	Not Available	2021-11-06	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_10) - 70eV, Positive	Not Available	2021-11-06	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_11) - 70eV, Positive	Not Available	2021-11-06	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_12) - 70eV, Positive	Not Available	2021-11-06	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_13) - 70eV, Positive	Not Available	2021-11-06	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_14) - 70eV, Positive	Not Available	2021-11-06	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_15) - 70eV, Positive	Not Available	2021-11-06	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - QTOF 4V, negative	splash10-004j-9170000000-997b74cb48ace33cccd6	2020-07-21	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - QTOF 23V, negative	splash10-004j-9000000000-6bc02f4fe0074c9abd68	2020-07-21	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - QTOF 25V, negative	splash10-004j-9000000000-bdadc167eb24a88aac33	2020-07-21	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - QTOF 27V, negative	splash10-004j-9000000000-93d31d83892e88720b87	2020-07-21	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - QTOF 30V, negative	splash10-004i-9000000000-10cd88e85162e6269751	2020-07-21	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - QTOF 33V, negative	splash10-004i-9000000000-e9f2bf02f0d01a879d20	2020-07-21	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - QTOF 35V, negative	splash10-004i-9000000000-732cd41f406b617c64a0	2020-07-21	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - QTOF 40V, negative	splash10-004i-9000000000-25a5607c50f3e9bb5a14	2020-07-21	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - QTOF 45V, negative	splash10-004i-9000000000-ea506b9429ed926c5f93	2020-07-21	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - QTOF 23V, negative	splash10-0002-9120000000-1172898b831a36b0afcb	2020-07-21	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - QTOF 25V, negative	splash10-0002-9110000000-132340cd62e8e4a0ccd2	2020-07-21	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - QTOF 27V, negative	splash10-0002-9110000000-297d4c6907686258e552	2020-07-21	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - QTOF 30V, negative	splash10-0002-9100000000-1cce49f995c912b1cc94	2020-07-21	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - QTOF 33V, negative	splash10-0002-9100000000-8bba2d7511cc9829eb36	2020-07-21	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - QTOF 35V, negative	splash10-0002-9100000000-89b3b4fdcb0326bfa0e0	2020-07-21	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - QTOF 40V, negative	splash10-0002-9100000000-91e850ff1cd255a2f7fd	2020-07-21	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - QTOF 45V, negative	splash10-002b-9100000000-9c43f84a30add3ebce50	2020-07-21	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - n/a 16V, negative	splash10-0002-9000000000-75847d481a06c31fa479	2020-07-21	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - n/a 16V, negative	splash10-004i-0091000000-0af17cfb2eb7eab94967	2020-07-21	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	splash10-01q9-3790000000-6f5913e9948fa7667e41	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	splash10-0btd-9710000000-3724bb9f611bbdc1fe11	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	splash10-0a4i-9200000000-8bc9cecb2dddad8ca5e3	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	splash10-002r-9520000000-c36fdbcc1d3b19b2fafd	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	splash10-004i-9100000000-b67b8ea484aa4ddb40e3	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	splash10-004i-9000000000-82b17cf4f5a8c927fe64	2015-09-15	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-17	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-17	View Spectrum

Chromatographic Retention Times and Retention Indices

Retention Times

Chromatography Type	Technique	Column	Deposition Date	Retention Time (s)
Liquid Chromatography	HILIC	Waters Acquity UPLC-BEH Amide column (retained)	2025-10-23	541.0
Liquid Chromatography	HILIC	Accucore 150 Amide HILIC (eluted)	2025-10-23	429.4
Liquid Chromatography	Reversed-phase	Hypersil Gold 1.9 µm C18 (void)	2025-10-23	47.1
Liquid Chromatography	Reversed-phase	Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) (eluted)	2025-10-23	230.0
Liquid Chromatography	Reversed-phase	XBridge C18 3.5u 2.1x50 mm (eluted)	2025-10-23	303.4
Liquid Chromatography	Reversed-phase	Ascentis Express C18 (void)	2025-10-23	312.0
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (void)	2025-10-23	453.6
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-23	874.2
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC (eluted)	2025-10-23	885.8
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	179.3
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-23	412.7
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (void)	2025-10-23	191.2
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	24.3
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	497.9
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	787.2
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (void)	2025-10-23	79.0
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (void)	2025-10-23	322.4
Liquid Chromatography	Reversed-phase	Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex (eluted)	2025-10-23	694.0
Liquid Chromatography	Reversed-phase	Waters Atlantis T3 (2.1 x 150 mm, 5 um) (eluted)	2025-10-23	592.0

Retention Indices

Chromatography Type	Peak Label	SMILES	Stationary Phase	Deposition Date	Retention Index
Gas Chromatography	Xylulose 5-phosphate_TMS_1	C[Si](C)(C)OCC(=O)[C@@H](O)[C@H](O)COP(=O)(O)O	standard non polar	2025-10-23	1825.89
Gas Chromatography	Xylulose 5-phosphate_TMS_2	C[Si](C)(C)O[C@H](C(=O)CO)[C@H](O)COP(=O)(O)O	standard non polar	2025-10-23	1875.17
Gas Chromatography	Xylulose 5-phosphate_TMS_3	C[Si](C)(C)O[C@H](COP(=O)(O)O)[C@H](O)C(=O)CO	standard non polar	2025-10-23	1904.79
Gas Chromatography	Xylulose 5-phosphate_TMS_4	C[Si](C)(C)OP(=O)(O)OC[C@@H](O)[C@H](O)C(=O)CO	standard non polar	2025-10-23	2013.23
Gas Chromatography	Xylulose 5-phosphate_TMS_5	C[Si](C)(C)OC(CO)=C(O)[C@H](O)COP(=O)(O)O	standard non polar	2025-10-23	2115.99
Gas Chromatography	Xylulose 5-phosphate_TMS_6	C[Si](C)(C)OC(=CO)[C@@H](O)[C@H](O)COP(=O)(O)O	standard non polar	2025-10-23	1878.37
Gas Chromatography	Xylulose 5-phosphate_TMS_7	C[Si](C)(C)OCC(=O)[C@@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O)O	standard non polar	2025-10-23	1745.16
Gas Chromatography	Xylulose 5-phosphate_TMS_8	C[Si](C)(C)OCC(=O)[C@@H](O)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard non polar	2025-10-23	2006.74
Gas Chromatography	Xylulose 5-phosphate_TMS_9	C[Si](C)(C)OCC(=O)[C@@H](O)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard non polar	2025-10-23	1876.06
Gas Chromatography	Xylulose 5-phosphate_TMS_10	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O)[C@H](O)COP(=O)(O)O	standard non polar	2025-10-23	1429.27
Gas Chromatography	Xylulose 5-phosphate_TMS_11	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O)[C@H](O)COP(=O)(O)O	standard non polar	2025-10-23	1468.96
Gas Chromatography	Xylulose 5-phosphate_TMS_12	C[Si](C)(C)O[C@H](C(=O)CO)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard non polar	2025-10-23	2269.08
Gas Chromatography	Xylulose 5-phosphate_TMS_13	C[Si](C)(C)O[C@H](C(=O)CO)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard non polar	2025-10-23	1991.88
Gas Chromatography	Xylulose 5-phosphate_TMS_14	C[Si](C)(C)OC(CO)=C(O[Si](C)(C)C)[C@H](O)COP(=O)(O)O	standard non polar	2025-10-23	2283.96
Gas Chromatography	Xylulose 5-phosphate_TMS_15	C[Si](C)(C)OC(=CO)[C@@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O)O	standard non polar	2025-10-23	1779.92
Gas Chromatography	Xylulose 5-phosphate_TMS_16	C[Si](C)(C)O[C@H](COP(=O)(O)O[Si](C)(C)C)[C@H](O)C(=O)CO	standard non polar	2025-10-23	1725.04
Gas Chromatography	Xylulose 5-phosphate_TMS_17	C[Si](C)(C)OC(CO)=C(O)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard non polar	2025-10-23	1783.33
Gas Chromatography	Xylulose 5-phosphate_TMS_18	C[Si](C)(C)OC(=CO)[C@@H](O)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard non polar	2025-10-23	1738.23
Gas Chromatography	Xylulose 5-phosphate_TMS_19	C[Si](C)(C)OP(=O)(OC[C@@H](O)[C@H](O)C(=O)CO)O[Si](C)(C)C	standard non polar	2025-10-23	2050.5
Gas Chromatography	Xylulose 5-phosphate_TMS_20	C[Si](C)(C)OC(CO)=C(O)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard non polar	2025-10-23	1943.48
Gas Chromatography	Xylulose 5-phosphate_TMS_21	C[Si](C)(C)OC(=CO)[C@@H](O)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard non polar	2025-10-23	2347.78
Gas Chromatography	Xylulose 5-phosphate_TMS_22	C[Si](C)(C)OCC(=O)[C@@H](O[Si](C)(C)C)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard non polar	2025-10-23	2050.13
Gas Chromatography	Xylulose 5-phosphate_TMS_23	C[Si](C)(C)OCC(=O)[C@@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard non polar	2025-10-23	1914.56
Gas Chromatography	Xylulose 5-phosphate_TMS_24	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O[Si](C)(C)C)[C@H](O)COP(=O)(O)O	standard non polar	2025-10-23	1765.6
Gas Chromatography	Xylulose 5-phosphate_TMS_25	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O)O	standard non polar	2025-10-23	1845.45
Gas Chromatography	Xylulose 5-phosphate_TMS_26	C[Si](C)(C)OCC(=O)[C@@H](O)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1630.61
Gas Chromatography	Xylulose 5-phosphate_TMS_27	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard non polar	2025-10-23	943.399
Gas Chromatography	Xylulose 5-phosphate_TMS_28	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard non polar	2025-10-23	1802.39
Gas Chromatography	Xylulose 5-phosphate_TMS_29	C[Si](C)(C)OCC(=O)[C@@H](O)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1672.07
Gas Chromatography	Xylulose 5-phosphate_TMS_30	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard non polar	2025-10-23	2002.89
Gas Chromatography	Xylulose 5-phosphate_TMS_31	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard non polar	2025-10-23	1606.87
Gas Chromatography	Xylulose 5-phosphate_TMS_32	C[Si](C)(C)O[C@H](C(=O)CO)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1962.6
Gas Chromatography	Xylulose 5-phosphate_TMS_33	C[Si](C)(C)OC(CO)=C(O[Si](C)(C)C)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard non polar	2025-10-23	2229.22
Gas Chromatography	Xylulose 5-phosphate_TMS_34	C[Si](C)(C)OC(=CO)[C@@H](O[Si](C)(C)C)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard non polar	2025-10-23	1687.74
Gas Chromatography	Xylulose 5-phosphate_TMS_35	C[Si](C)(C)O[C@H](C(=O)CO)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1820.58
Gas Chromatography	Xylulose 5-phosphate_TMS_36	C[Si](C)(C)OC(CO)=C(O[Si](C)(C)C)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard non polar	2025-10-23	2311.15
Gas Chromatography	Xylulose 5-phosphate_TMS_37	C[Si](C)(C)OC(=CO)[C@@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard non polar	2025-10-23	1869.13
Gas Chromatography	Xylulose 5-phosphate_TMS_38	C[Si](C)(C)O[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@H](O)C(=O)CO	standard non polar	2025-10-23	1982.87
Gas Chromatography	Xylulose 5-phosphate_TMS_39	C[Si](C)(C)OC(CO)=C(O)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1957.11
Gas Chromatography	Xylulose 5-phosphate_TMS_40	C[Si](C)(C)OC(=CO)[C@@H](O)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	2026.4
Gas Chromatography	Xylulose 5-phosphate_TMS_41	C[Si](C)(C)OC(CO)=C(O)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1927.1
Gas Chromatography	Xylulose 5-phosphate_TMS_42	C[Si](C)(C)OC(=CO)[C@@H](O)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1654.03
Gas Chromatography	Xylulose 5-phosphate_TMS_43	C[Si](C)(C)OCC(=O)[C@@H](O[Si](C)(C)C)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1836.79
Gas Chromatography	Xylulose 5-phosphate_TMS_44	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O[Si](C)(C)C)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard non polar	2025-10-23	1637.77
Gas Chromatography	Xylulose 5-phosphate_TMS_45	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard non polar	2025-10-23	1311.57
Gas Chromatography	Xylulose 5-phosphate_TMS_46	C[Si](C)(C)OCC(=O)[C@@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1861.65
Gas Chromatography	Xylulose 5-phosphate_TMS_47	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O[Si](C)(C)C)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard non polar	2025-10-23	1573.62
Gas Chromatography	Xylulose 5-phosphate_TMS_48	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard non polar	2025-10-23	1756.81
Gas Chromatography	Xylulose 5-phosphate_TMS_49	C[Si](C)(C)OCC(=O)[C@@H](O)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1529.44
Gas Chromatography	Xylulose 5-phosphate_TMS_50	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1767.73
Gas Chromatography	Xylulose 5-phosphate_TMS_51	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1105.58
Gas Chromatography	Xylulose 5-phosphate_TMS_52	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	2288.26
Gas Chromatography	Xylulose 5-phosphate_TMS_53	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1329.28
Gas Chromatography	Xylulose 5-phosphate_TMS_54	C[Si](C)(C)O[C@H](C(=O)CO)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1972.81
Gas Chromatography	Xylulose 5-phosphate_TMS_55	C[Si](C)(C)OC(CO)=C(O[Si](C)(C)C)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1685.06
Gas Chromatography	Xylulose 5-phosphate_TMS_56	C[Si](C)(C)OC(=CO)[C@@H](O[Si](C)(C)C)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	2031.12
Gas Chromatography	Xylulose 5-phosphate_TMS_57	C[Si](C)(C)OC(CO)=C(O[Si](C)(C)C)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1962.5
Gas Chromatography	Xylulose 5-phosphate_TMS_58	C[Si](C)(C)OC(=CO)[C@@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1976.8
Gas Chromatography	Xylulose 5-phosphate_TMS_59	C[Si](C)(C)OC(CO)=C(O)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1884.14
Gas Chromatography	Xylulose 5-phosphate_TMS_60	C[Si](C)(C)OC(=CO)[C@@H](O)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	2081.78
Gas Chromatography	Xylulose 5-phosphate_TMS_61	C[Si](C)(C)OCC(=O)[C@@H](O[Si](C)(C)C)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	848.814
Gas Chromatography	Xylulose 5-phosphate_TMS_62	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O[Si](C)(C)C)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	2392.15
Gas Chromatography	Xylulose 5-phosphate_TMS_63	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1651.55
Gas Chromatography	Xylulose 5-phosphate_TMS_64	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O[Si](C)(C)C)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1440.6
Gas Chromatography	Xylulose 5-phosphate_TMS_65	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	2453.87
Gas Chromatography	Xylulose 5-phosphate_TMS_66	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	2281.16
Gas Chromatography	Xylulose 5-phosphate_TMS_67	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	2504.47
Gas Chromatography	Xylulose 5-phosphate_TMS_68	C[Si](C)(C)OC(CO)=C(O[Si](C)(C)C)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1550.6
Gas Chromatography	Xylulose 5-phosphate_TMS_69	C[Si](C)(C)OC(=CO)[C@@H](O[Si](C)(C)C)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	2587.19
Gas Chromatography	Xylulose 5-phosphate_TMS_70	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O[Si](C)(C)C)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1887.06
Gas Chromatography	Xylulose 5-phosphate_TMS_71	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard non polar	2025-10-23	1303.45
Gas Chromatography	Xylulose 5-phosphate_TMS_1	C[Si](C)(C)OCC(=O)[C@@H](O)[C@H](O)COP(=O)(O)O	standard polar	2025-10-23	2224.52
Gas Chromatography	Xylulose 5-phosphate_TMS_2	C[Si](C)(C)O[C@H](C(=O)CO)[C@H](O)COP(=O)(O)O	standard polar	2025-10-23	1955.14
Gas Chromatography	Xylulose 5-phosphate_TMS_3	C[Si](C)(C)O[C@H](COP(=O)(O)O)[C@H](O)C(=O)CO	standard polar	2025-10-23	1475.36
Gas Chromatography	Xylulose 5-phosphate_TMS_4	C[Si](C)(C)OP(=O)(O)OC[C@@H](O)[C@H](O)C(=O)CO	standard polar	2025-10-23	1989.75
Gas Chromatography	Xylulose 5-phosphate_TMS_5	C[Si](C)(C)OC(CO)=C(O)[C@H](O)COP(=O)(O)O	standard polar	2025-10-23	1871.62
Gas Chromatography	Xylulose 5-phosphate_TMS_6	C[Si](C)(C)OC(=CO)[C@@H](O)[C@H](O)COP(=O)(O)O	standard polar	2025-10-23	2016.58
Gas Chromatography	Xylulose 5-phosphate_TMS_7	C[Si](C)(C)OCC(=O)[C@@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O)O	standard polar	2025-10-23	1979.87
Gas Chromatography	Xylulose 5-phosphate_TMS_8	C[Si](C)(C)OCC(=O)[C@@H](O)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard polar	2025-10-23	2056.72
Gas Chromatography	Xylulose 5-phosphate_TMS_9	C[Si](C)(C)OCC(=O)[C@@H](O)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard polar	2025-10-23	1232.53
Gas Chromatography	Xylulose 5-phosphate_TMS_10	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O)[C@H](O)COP(=O)(O)O	standard polar	2025-10-23	1379.59
Gas Chromatography	Xylulose 5-phosphate_TMS_11	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O)[C@H](O)COP(=O)(O)O	standard polar	2025-10-23	1609.27
Gas Chromatography	Xylulose 5-phosphate_TMS_12	C[Si](C)(C)O[C@H](C(=O)CO)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard polar	2025-10-23	2165.36
Gas Chromatography	Xylulose 5-phosphate_TMS_13	C[Si](C)(C)O[C@H](C(=O)CO)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard polar	2025-10-23	2375.15
Gas Chromatography	Xylulose 5-phosphate_TMS_14	C[Si](C)(C)OC(CO)=C(O[Si](C)(C)C)[C@H](O)COP(=O)(O)O	standard polar	2025-10-23	2178.83
Gas Chromatography	Xylulose 5-phosphate_TMS_15	C[Si](C)(C)OC(=CO)[C@@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O)O	standard polar	2025-10-23	2137.39
Gas Chromatography	Xylulose 5-phosphate_TMS_16	C[Si](C)(C)O[C@H](COP(=O)(O)O[Si](C)(C)C)[C@H](O)C(=O)CO	standard polar	2025-10-23	1765.48
Gas Chromatography	Xylulose 5-phosphate_TMS_17	C[Si](C)(C)OC(CO)=C(O)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard polar	2025-10-23	2270.4
Gas Chromatography	Xylulose 5-phosphate_TMS_18	C[Si](C)(C)OC(=CO)[C@@H](O)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard polar	2025-10-23	2150.65
Gas Chromatography	Xylulose 5-phosphate_TMS_19	C[Si](C)(C)OP(=O)(OC[C@@H](O)[C@H](O)C(=O)CO)O[Si](C)(C)C	standard polar	2025-10-23	2213.65
Gas Chromatography	Xylulose 5-phosphate_TMS_20	C[Si](C)(C)OC(CO)=C(O)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard polar	2025-10-23	1979.97
Gas Chromatography	Xylulose 5-phosphate_TMS_21	C[Si](C)(C)OC(=CO)[C@@H](O)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard polar	2025-10-23	1891.12
Gas Chromatography	Xylulose 5-phosphate_TMS_22	C[Si](C)(C)OCC(=O)[C@@H](O[Si](C)(C)C)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard polar	2025-10-23	2486.98
Gas Chromatography	Xylulose 5-phosphate_TMS_23	C[Si](C)(C)OCC(=O)[C@@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard polar	2025-10-23	2421.69
Gas Chromatography	Xylulose 5-phosphate_TMS_24	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O[Si](C)(C)C)[C@H](O)COP(=O)(O)O	standard polar	2025-10-23	1873.19
Gas Chromatography	Xylulose 5-phosphate_TMS_25	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O)O	standard polar	2025-10-23	1477.73
Gas Chromatography	Xylulose 5-phosphate_TMS_26	C[Si](C)(C)OCC(=O)[C@@H](O)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	2106.93
Gas Chromatography	Xylulose 5-phosphate_TMS_27	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard polar	2025-10-23	1818.55
Gas Chromatography	Xylulose 5-phosphate_TMS_28	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard polar	2025-10-23	2311.05
Gas Chromatography	Xylulose 5-phosphate_TMS_29	C[Si](C)(C)OCC(=O)[C@@H](O)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1354.74
Gas Chromatography	Xylulose 5-phosphate_TMS_30	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard polar	2025-10-23	2721.34
Gas Chromatography	Xylulose 5-phosphate_TMS_31	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard polar	2025-10-23	2044.66
Gas Chromatography	Xylulose 5-phosphate_TMS_32	C[Si](C)(C)O[C@H](C(=O)CO)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1715.53
Gas Chromatography	Xylulose 5-phosphate_TMS_33	C[Si](C)(C)OC(CO)=C(O[Si](C)(C)C)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard polar	2025-10-23	1528.41
Gas Chromatography	Xylulose 5-phosphate_TMS_34	C[Si](C)(C)OC(=CO)[C@@H](O[Si](C)(C)C)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard polar	2025-10-23	2044.35
Gas Chromatography	Xylulose 5-phosphate_TMS_35	C[Si](C)(C)O[C@H](C(=O)CO)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	2180.68
Gas Chromatography	Xylulose 5-phosphate_TMS_36	C[Si](C)(C)OC(CO)=C(O[Si](C)(C)C)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard polar	2025-10-23	1725.3
Gas Chromatography	Xylulose 5-phosphate_TMS_37	C[Si](C)(C)OC(=CO)[C@@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard polar	2025-10-23	2232.18
Gas Chromatography	Xylulose 5-phosphate_TMS_38	C[Si](C)(C)O[C@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)[C@H](O)C(=O)CO	standard polar	2025-10-23	1754.88
Gas Chromatography	Xylulose 5-phosphate_TMS_39	C[Si](C)(C)OC(CO)=C(O)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1201.38
Gas Chromatography	Xylulose 5-phosphate_TMS_40	C[Si](C)(C)OC(=CO)[C@@H](O)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	2388.0
Gas Chromatography	Xylulose 5-phosphate_TMS_41	C[Si](C)(C)OC(CO)=C(O)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	2199.79
Gas Chromatography	Xylulose 5-phosphate_TMS_42	C[Si](C)(C)OC(=CO)[C@@H](O)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1741.41
Gas Chromatography	Xylulose 5-phosphate_TMS_43	C[Si](C)(C)OCC(=O)[C@@H](O[Si](C)(C)C)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	2805.48
Gas Chromatography	Xylulose 5-phosphate_TMS_44	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O[Si](C)(C)C)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard polar	2025-10-23	2598.03
Gas Chromatography	Xylulose 5-phosphate_TMS_45	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)[C@@H](COP(=O)(O)O)O[Si](C)(C)C	standard polar	2025-10-23	1843.36
Gas Chromatography	Xylulose 5-phosphate_TMS_46	C[Si](C)(C)OCC(=O)[C@@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	2111.54
Gas Chromatography	Xylulose 5-phosphate_TMS_47	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O[Si](C)(C)C)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard polar	2025-10-23	2279.51
Gas Chromatography	Xylulose 5-phosphate_TMS_48	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O)O[Si](C)(C)C	standard polar	2025-10-23	1950.49
Gas Chromatography	Xylulose 5-phosphate_TMS_49	C[Si](C)(C)OCC(=O)[C@@H](O)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	2180.1
Gas Chromatography	Xylulose 5-phosphate_TMS_50	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1645.24
Gas Chromatography	Xylulose 5-phosphate_TMS_51	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	2871.04
Gas Chromatography	Xylulose 5-phosphate_TMS_52	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1380.61
Gas Chromatography	Xylulose 5-phosphate_TMS_53	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	2936.84
Gas Chromatography	Xylulose 5-phosphate_TMS_54	C[Si](C)(C)O[C@H](C(=O)CO)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1296.72
Gas Chromatography	Xylulose 5-phosphate_TMS_55	C[Si](C)(C)OC(CO)=C(O[Si](C)(C)C)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1709.39
Gas Chromatography	Xylulose 5-phosphate_TMS_56	C[Si](C)(C)OC(=CO)[C@@H](O[Si](C)(C)C)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1560.54
Gas Chromatography	Xylulose 5-phosphate_TMS_57	C[Si](C)(C)OC(CO)=C(O[Si](C)(C)C)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1703.05
Gas Chromatography	Xylulose 5-phosphate_TMS_58	C[Si](C)(C)OC(=CO)[C@@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	2464.62
Gas Chromatography	Xylulose 5-phosphate_TMS_59	C[Si](C)(C)OC(CO)=C(O)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	2030.47
Gas Chromatography	Xylulose 5-phosphate_TMS_60	C[Si](C)(C)OC(=CO)[C@@H](O)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	2038.75
Gas Chromatography	Xylulose 5-phosphate_TMS_61	C[Si](C)(C)OCC(=O)[C@@H](O[Si](C)(C)C)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1723.4
Gas Chromatography	Xylulose 5-phosphate_TMS_62	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O[Si](C)(C)C)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	2033.88
Gas Chromatography	Xylulose 5-phosphate_TMS_63	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)[C@@H](COP(=O)(O)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	2207.56
Gas Chromatography	Xylulose 5-phosphate_TMS_64	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O[Si](C)(C)C)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1933.41
Gas Chromatography	Xylulose 5-phosphate_TMS_65	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)[C@H](O)COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1866.8
Gas Chromatography	Xylulose 5-phosphate_TMS_66	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1319.6
Gas Chromatography	Xylulose 5-phosphate_TMS_67	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1482.35
Gas Chromatography	Xylulose 5-phosphate_TMS_68	C[Si](C)(C)OC(CO)=C(O[Si](C)(C)C)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	2449.01
Gas Chromatography	Xylulose 5-phosphate_TMS_69	C[Si](C)(C)OC(=CO)[C@@H](O[Si](C)(C)C)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1935.19
Gas Chromatography	Xylulose 5-phosphate_TMS_70	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O[Si](C)(C)C)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1820.95
Gas Chromatography	Xylulose 5-phosphate_TMS_71	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)[C@@H](COP(=O)(O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C	standard polar	2025-10-23	1925.74

Biological Properties

Cellular Locations

Cytoplasm

Biospecimen Locations

Cellular Cytoplasm
Feces

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species
MMDBp0192420	Transketolase-like protein 1	Unknown	P51854	Homo sapiens
MMDBp0192425	Transketolase	Unknown	P29401	Homo sapiens
MMDBp0193654	Xylulose kinase	Enzyme	O75191	Homo sapiens
MMDBp0193777	Putative uncharacterized protein RPE	Enzyme	Q53TV9	Homo sapiens
MMDBp0194052	Ribulose-phosphate 3-epimerase	Enzyme	Q96AT9	Homo sapiens
MMDBp0194056	Transketolase-like protein 2	Unknown	Q9H0I9	Homo sapiens

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Name	SMPDB/PathBank	Species
Ara operon Inactivation (Positive regulation of araBAD)		Escherichia coli Escherichia coli SMS-3-5 Escherichia coli UTI89 Escherichia coli 55989 Escherichia coli SE11 Actinobacillus succinogenes 130Z Escherichia coli CFT073 Bacillus subtilis Klebsiella pneumoniae Bacillus amyloliquefaciens Roseburia intestinalis L1-82 Clostridium saccharoperbutylacetonicum N1-4(HMT) Salmonella enterica Clostridium acetobutylicum ATCC 824 Lactobacillus fermentum IFO 3956 Anaerostipes hadrus Bacillus halodurans C-125 Bacillus timonensis 10403023 Bacteroides thetaiotaomicron Bacteroides thetaiotaomicron VPI-5482 Blautia obeum A2-162 Blautia obeum ATCC 29174 Clostridium beijerinckii NCIMB 8052 Clostridium saccharolyticum Coprococcus catus GD/7 Dorea formicigenerans ATCC 27755 Dysgonomonas gadei ATCC BAA-286 Limosilactobacillus fermentum Lactobacillus reuteri Megamonas hypermegale Odoribacter splanchnicus DSM 20712 Roseburia hominis A2-183 Ruminococcus torques L2-14 Spirochaeta thermophila Citrobacter koseri Shigella boydii Shigella dysenteriae Shigella flexneri Shigella sonnei Aeromonas hydrophila Bacteroides uniformis Leuconostoc mesenteroides Ruminococcus albus Enterococcus gallinarum Bacillus licheniformis Priestia megaterium Bacillus pumilus Lactobacillus plantarum Lactobacillus sakei Thermotoga neapolitana Acidothermus cellulolyticus Enterococcus avium Enterococcus casseliflavus Actinosynnema mirum Mitsuokella multacida Blautia hydrogenotrophica Enterobacter cancerogenus Bacillus clausii Bacillus selenitireducens Dorea longicatena Citrobacter youngae Marvinbryantia formatexigens Escherichia albertii Subdoligranulum variabile Lactobacillus antri Coprococcus comes Bacteroides oleiciplenus Blautia obeum Clostridium beijerinckii Dorea formicigenerans Dysgonomonas gadei Enterococcus faecium Klebsiella variicola Lactococcus lactis Leuconostoc citreum Odoribacter splanchnicus Aeromonas hydrophila subsp. hydrophila ATCC 7966 Bacillus megaterium QM B1551 Bacillus licheniformis ATCC 14580 Bacillus clausii KSM-K16 Bacillus amyloliquefaciens FZB42 Bacillus pumilus SAFR-032 Priestia megaterium DSM 319 Bacillus subtilis subsp. spizizenii str. W23 Bacillus amyloliquefaciens DSM 7 Citrobacter koseri ATCC BAA-895 Cronobacter sakazakii ATCC BAA-894 Dyadobacter fermentans DSM 18053 Enterobacter cloacae subsp. cloacae ATCC 13047 Escherichia coli APEC O1 Escherichia coli E24377A Escherichia coli O127:H6 str. E2348/69 Escherichia coli UMN026 Escherichia fergusonii ATCC 35469 Escherichia coli ED1a Escherichia coli IAI39 Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Lactobacillus plantarum WCFS1 Lactobacillus sakei subsp. sakei 23K Lactobacillus brevis ATCC 367 Lactobacillus reuteri DSM 20016 Lactobacillus reuteri SD2112 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Escherichia coli 042 Pediococcus pentosaceus ATCC 25745 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 Rhizobium leguminosarum bv. viciae 3841 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella enterica subsp. enterica serovar Newport str. SL254 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 Salmonella enterica subsp. enterica serovar Agona str. SL483 Salmonella enterica subsp. enterica serovar Dublin str. CT02021853 Shigella sonnei Ss046 Shigella dysenteriae Sd197 Shigella flexneri 5 str. 8401 Spirosoma linguale DSM 74 Vibrio parahaemolyticus RIMD 2210633 Yersinia enterocolitica subsp. enterocolitica 8081 Yersinia pseudotuberculosis IP 31758 Bacteroides graminisolvens Bacteroides graminisolvens DSM 19988 = JCM 15093 Bacteroides oleiciplenus YIT 12058 Bacteroides uniformis ATCC 8492 Bacteroides sp. 1_1_14 Bacteroides sp. D2 Bacteroides sp. D20 Parabacteroides johnsonii DSM 18315 Spirosoma linguale Aeromonas caviae Aeromonas media Aeromonas veronii Succinivibrio dextrinosolvens Citrobacter amalonaticus Citrobacter amalonaticus Y19 Citrobacter freundii Citrobacter youngae ATCC 29220 Enterobacter hormaechei Escherichia albertii TW07627 Klebsiella aerogenes Salmonella Salmonella enterica subsp. enterica serovar Typhimurium Trabulsiella guamensis Trabulsiella guamensis ATCC 49490 Hafnia alvei Hafnia alvei ATCC 51873 Yersinia enterocolitica Yersinia pestis Yersinia pseudotuberculosis Grimontia hollisae CIP 101886 Vibrio fluvialis Vibrio fluvialis PG41 Vibrio parahaemolyticus Olsenella profusa F0195 Bacillus altitudinis Paenibacillus lactis 154 Enterococcus casseliflavus ATCC 12755 Enterococcus phoeniculicola ATCC BAA-412 Lactobacillus antri DSM 16041 Lactobacillus mucosae LM1 Lactobacillus reuteri CF48-3A Lactobacillus reuteri MM4-1A Pediococcus acidilactici DSM 20284 Pediococcus pentosaceus Leuconostoc lactis Weissella cibaria Blautia hydrogenotrophica DSM 10507 Blautia wexlerae Coprococcus comes ATCC 27758 Dorea longicatena DSM 13814 Clostridium asparagiforme DSM 15981 [Clostridium] bolteae ATCC BAA-613 Clostridium citroniae WAL-17108 [Clostridium] hylemonae DSM 15053 [Clostridium] symbiosum WAL-14163 Pseudoflavonifractor capillosus ATCC 29799 Subdoligranulum variabile DSM 15176 Mitsuokella multacida DSM 20544 Leuconostoc citreum KM20 Acidothermus cellulolyticus 11B Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 Amycolatopsis mediterranei U32 Anoxybacillus flavithermus WK1 Arthrobacter sp. FB24 Arthrobacter aurescens TC1 Arthrobacter chlorophenolicus A6 Bacillus selenitireducens MLS10 Beutenbergia cavernae DSM 12333 Catenulispora acidiphila DSM 44928 Clavibacter michiganensis subsp. michiganensis NCPPB 382 Clostridium cellulolyticum H10 Frankia sp. EuI1c Geobacillus kaustophilus HTA426 Geobacillus thermodenitrificans NG80-2 Kribbella flavida DSM 17836 Nocardioides sp. JS614 Oceanobacillus iheyensis HTE831 Sanguibacter keddieii DSM 10542 Stackebrandtia nassauensis DSM 44728 Streptosporangium roseum DSM 43021 Thermoanaerobacter italicus Ab9 Thermoanaerobacterium thermosaccharolyticum DSM 571 Acidipropionibacterium acidipropionici ATCC 4875 Klebsiella aerogenes KCTC 2190 Aeromonas salmonicida subsp. salmonicida A449
Ascorbate Metabolism
L-Arabinose Degradation I		Escherichia coli Escherichia coli SMS-3-5 Escherichia coli UTI89 Escherichia coli 55989 Escherichia coli SE11 Actinobacillus succinogenes 130Z Escherichia coli CFT073 Bacillus subtilis Klebsiella pneumoniae Bacillus amyloliquefaciens Roseburia intestinalis L1-82 Clostridium saccharoperbutylacetonicum N1-4(HMT) Salmonella enterica Clostridium acetobutylicum ATCC 824 Lactobacillus fermentum IFO 3956 Anaerostipes hadrus Bacillus halodurans C-125 Bacillus timonensis 10403023 Bacteroides thetaiotaomicron Bacteroides thetaiotaomicron VPI-5482 Blautia obeum A2-162 Blautia obeum ATCC 29174 Clostridium beijerinckii NCIMB 8052 Clostridium saccharolyticum Coprococcus catus GD/7 Dorea formicigenerans ATCC 27755 Dysgonomonas gadei ATCC BAA-286 Limosilactobacillus fermentum Lactobacillus reuteri Megamonas hypermegale Odoribacter splanchnicus DSM 20712 Roseburia hominis A2-183 Ruminococcus torques L2-14 Spirochaeta thermophila Citrobacter koseri Shigella boydii Shigella dysenteriae Shigella flexneri Shigella sonnei Aeromonas hydrophila Bacteroides uniformis Leuconostoc mesenteroides Ruminococcus albus Enterococcus gallinarum Bacillus licheniformis Priestia megaterium Bacillus pumilus Lactobacillus plantarum Lactobacillus sakei Thermotoga neapolitana Acidothermus cellulolyticus Enterococcus avium Enterococcus casseliflavus Actinosynnema mirum Mitsuokella multacida Blautia hydrogenotrophica Enterobacter cancerogenus Bacillus clausii Bacillus selenitireducens Dorea longicatena Citrobacter youngae Marvinbryantia formatexigens Escherichia albertii Subdoligranulum variabile Lactobacillus antri Coprococcus comes Bacteroides oleiciplenus Blautia obeum Clostridium beijerinckii Dorea formicigenerans Dysgonomonas gadei Enterococcus faecium Klebsiella variicola Lactococcus lactis Leuconostoc citreum Odoribacter splanchnicus Aeromonas hydrophila subsp. hydrophila ATCC 7966 Bacillus megaterium QM B1551 Bacillus licheniformis ATCC 14580 Bacillus clausii KSM-K16 Bacillus amyloliquefaciens FZB42 Bacillus pumilus SAFR-032 Priestia megaterium DSM 319 Bacillus subtilis subsp. spizizenii str. W23 Bacillus amyloliquefaciens DSM 7 Citrobacter koseri ATCC BAA-895 Cronobacter sakazakii ATCC BAA-894 Dyadobacter fermentans DSM 18053 Enterobacter cloacae subsp. cloacae ATCC 13047 Escherichia coli APEC O1 Escherichia coli E24377A Escherichia coli O127:H6 str. E2348/69 Escherichia coli UMN026 Escherichia fergusonii ATCC 35469 Escherichia coli ED1a Escherichia coli IAI39 Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Lactobacillus plantarum WCFS1 Lactobacillus sakei subsp. sakei 23K Lactobacillus brevis ATCC 367 Lactobacillus reuteri DSM 20016 Lactobacillus reuteri SD2112 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Escherichia coli 042 Pediococcus pentosaceus ATCC 25745 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 Rhizobium leguminosarum bv. viciae 3841 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella enterica subsp. enterica serovar Newport str. SL254 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 Salmonella enterica subsp. enterica serovar Agona str. SL483 Salmonella enterica subsp. enterica serovar Dublin str. CT02021853 Shigella sonnei Ss046 Shigella dysenteriae Sd197 Shigella flexneri 5 str. 8401 Spirosoma linguale DSM 74 Vibrio parahaemolyticus RIMD 2210633 Yersinia enterocolitica subsp. enterocolitica 8081 Yersinia pseudotuberculosis IP 31758 Bacteroides graminisolvens Bacteroides graminisolvens DSM 19988 = JCM 15093 Bacteroides oleiciplenus YIT 12058 Bacteroides uniformis ATCC 8492 Bacteroides sp. 1_1_14 Bacteroides sp. D2 Bacteroides sp. D20 Parabacteroides johnsonii DSM 18315 Spirosoma linguale Aeromonas caviae Aeromonas media Aeromonas veronii Succinivibrio dextrinosolvens Citrobacter amalonaticus Citrobacter amalonaticus Y19 Citrobacter freundii Citrobacter youngae ATCC 29220 Enterobacter hormaechei Escherichia albertii TW07627 Klebsiella aerogenes Salmonella Salmonella enterica subsp. enterica serovar Typhimurium Trabulsiella guamensis Trabulsiella guamensis ATCC 49490 Hafnia alvei Hafnia alvei ATCC 51873 Yersinia enterocolitica Yersinia pestis Yersinia pseudotuberculosis Grimontia hollisae CIP 101886 Vibrio fluvialis Vibrio fluvialis PG41 Vibrio parahaemolyticus Olsenella profusa F0195 Bacillus altitudinis Paenibacillus lactis 154 Enterococcus casseliflavus ATCC 12755 Enterococcus phoeniculicola ATCC BAA-412 Lactobacillus antri DSM 16041 Lactobacillus mucosae LM1 Lactobacillus reuteri CF48-3A Lactobacillus reuteri MM4-1A Pediococcus acidilactici DSM 20284 Pediococcus pentosaceus Leuconostoc lactis Weissella cibaria Blautia hydrogenotrophica DSM 10507 Blautia wexlerae Coprococcus comes ATCC 27758 Dorea longicatena DSM 13814 Clostridium asparagiforme DSM 15981 [Clostridium] bolteae ATCC BAA-613 Clostridium citroniae WAL-17108 [Clostridium] hylemonae DSM 15053 [Clostridium] symbiosum WAL-14163 Pseudoflavonifractor capillosus ATCC 29799 Subdoligranulum variabile DSM 15176 Mitsuokella multacida DSM 20544 Leuconostoc citreum KM20 Acidothermus cellulolyticus 11B Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 Amycolatopsis mediterranei U32 Anoxybacillus flavithermus WK1 Arthrobacter sp. FB24 Arthrobacter aurescens TC1 Arthrobacter chlorophenolicus A6 Bacillus selenitireducens MLS10 Beutenbergia cavernae DSM 12333 Catenulispora acidiphila DSM 44928 Clavibacter michiganensis subsp. michiganensis NCPPB 382 Clostridium cellulolyticum H10 Frankia sp. EuI1c Geobacillus kaustophilus HTA426 Geobacillus thermodenitrificans NG80-2 Kribbella flavida DSM 17836 Nocardioides sp. JS614 Oceanobacillus iheyensis HTE831 Sanguibacter keddieii DSM 10542 Stackebrandtia nassauensis DSM 44728 Streptosporangium roseum DSM 43021 Thermoanaerobacter italicus Ab9 Thermoanaerobacterium thermosaccharolyticum DSM 571 Acidipropionibacterium acidipropionici ATCC 4875 Klebsiella aerogenes KCTC 2190 Aeromonas salmonicida subsp. salmonicida A449 Mannheimia succiniciproducens MBEL55E Candidatus Koribacter versatilis Ellin345 Cellvibrio japonicus Ueda107 Chitinophaga pinensis DSM 2588 Citrobacter rodentium ICC168 Cronobacter turicensis z3032 Dickeya dadantii Ech703 Dickeya zeae Ech1591 Dickeya dadantii Ech586 Dickeya dadantii 3937 Enterobacter sp. 638 Enterobacter cloacae SCF1 Erwinia tasmaniensis Et1/99 Erwinia amylovora CFBP1430 Erwinia billingiae Eb661 Gramella forsetii KT0803 Halorhabdus utahensis DSM 12940 Herpetosiphon aurantiacus DSM 785 Jannaschia sp. CCS1 Klebsiella pneumoniae 342 Leadbetterella byssophila DSM 17132 Leptothrix cholodnii SP-6 Sorangium cellulosum 'So ce 56' Opitutus terrae PB90-1 Pantoea ananatis LMG 20103 Pectobacterium atrosepticum SCRI1043 Pectobacterium carotovorum subsp. carotovorum PC1 Pedobacter heparinus DSM 2366 Saccharophagus degradans 2-40 Salmonella enterica subsp. enterica serovar Paratyphi A str. Shewanella sp. ANA-3 Shewanella sp. W3-18-1 Shigella flexneri 2a str. 301 Shigella boydii Sb227 Shigella boydii CDC 3083-94 Spirochaeta thermophila DSM 6192 Thermotoga petrophila RKU-1 Thermotoga sp. RQ2 Thermotoga neapolitana DSM 4359 Tolumonas auensis DSM 9187 Zunongwangia profunda SM-A87 Atlantibacter hermannii NBRC 105704 Klebsiella michiganensis KCTC 1686 Chania multitudinisentens RB-25 Hungatella hathewayi DSM 13479
L-Lyxose Degradation
Xylose Degradation I		Escherichia coli Escherichia coli SMS-3-5 Escherichia coli UTI89 Escherichia coli 55989 Escherichia coli SE11 Actinobacillus succinogenes 130Z Escherichia coli CFT073 Ochrobactrum anthropi Bacillus subtilis Klebsiella pneumoniae Streptomyces griseus subsp. griseus NBRC 13350 Bacillus amyloliquefaciens Clostridium saccharoperbutylacetonicum N1-4(HMT) Salmonella enterica Haemophilus influenzae Haemophilus influenzae Rd KW20 Lactobacillus fermentum IFO 3956 Streptomyces avermitilis MA-4680 Alistipes finegoldii DSM 17242 Bacillus halodurans C-125 Bacillus timonensis 10403023 Bacteroides caccae Bacteroides cellulosilyticus Bacteroides eggerthii Bacteroides fragilis Bacteroides fragilis 638R Bacteroides fragilis YCH46 Bacteroides ovatus Bacteroides stercoris Bacteroides stercoris ATCC 43183 Bacteroides thetaiotaomicron Bacteroides thetaiotaomicron VPI-5482 Bacteroides vulgatus Bacteroides xylanisolvens XB1A Bifidobacterium adolescentis Bifidobacterium adolescentis ATCC 15703 Bifidobacterium animalis subsp. lactis Bifidobacterium longum Bifidobacterium longum DJO10A Bifidobacterium longum NCC2705 Bifidobacterium longum subsp. longum JDM301 Clostridium beijerinckii NCIMB 8052 Dysgonomonas gadei ATCC BAA-286 Limosilactobacillus fermentum Ochrobactrum anthropi ATCC 49188 Ochrobactrum intermedium LMG 3301 Parabacteroides distasonis Parabacteroides distasonis ATCC 8503 Parabacteroides goldsteinii dnLKV18 Ruminococcus bicirculans Ruminococcus champanellensis 18P13 = JCM 17042 Spirochaeta thermophila Burkholderia cepacia Pseudomonas fluorescens Pseudomonas syringae Xanthomonas campestris Bradyrhizobium japonicum Mesorhizobium loti Sinorhizobium meliloti Citrobacter koseri Proteus mirabilis Shigella boydii Shigella flexneri Shigella sonnei Bacteroides uniformis Leuconostoc mesenteroides Enterococcus gallinarum Bacillus licheniformis Priestia megaterium Bacillus pumilus Weissella confusa Lactobacillus sakei Bifidobacterium angulatum Cellulomonas flavigena Thermotoga neapolitana Roseobacter denitrificans Bifidobacterium pseudocatenulatum Acidothermus cellulolyticus Caldicellulosiruptor bescii Enterococcus casseliflavus Actinosynnema mirum Caldicellulosiruptor saccharolyticus Brachyspira pilosicoli Burkholderia vietnamiensis Enterobacter cancerogenus Bifidobacterium gallicum Bacillus clausii Bacillus selenitireducens Burkholderia multivorans Burkholderia cenocepacia Actinomyces urogenitalis Citrobacter youngae Burkholderia ambifaria Subdoligranulum variabile Lactobacillus antri Bacteroides nordii Bacteroides plebeius Phocaeicola coprocola Bacteroides intestinalis Bacteroides salanitronis Bacteroides fluxus Bacteroides oleiciplenus Bacteroides faecis Agrobacterium tumefaciens Alistipes finegoldii Bacteroides helcogenes Bacteroides xylanisolvens Bifidobacterium animalis Bifidobacterium catenulatum Clostridium beijerinckii Dysgonomonas gadei Klebsiella variicola Lactococcus lactis Leuconostoc citreum Parabacteroides goldsteinii Actinobacillus pleuropneumoniae serovar 5b str. L20 Actinobacillus pleuropneumoniae serovar 3 str. JL03 Actinobacillus pleuropneumoniae serovar 7 str. AP76 Agrobacterium tumefaciens str. C58 Bacillus cereus ATCC 10987 Bacillus megaterium QM B1551 Bacillus licheniformis ATCC 14580 Bacillus clausii KSM-K16 Bacillus amyloliquefaciens FZB42 Bacillus pumilus SAFR-032 Priestia megaterium DSM 319 Bacillus subtilis subsp. spizizenii str. W23 Bifidobacterium animalis subsp. lactis AD011 Bradyrhizobium japonicum USDA 110 Citrobacter koseri ATCC BAA-895 Cronobacter sakazakii ATCC BAA-894 Dyadobacter fermentans DSM 18053 Enterobacter cloacae subsp. cloacae ATCC 13047 Escherichia coli APEC O1 Escherichia coli E24377A Escherichia coli O127:H6 str. E2348/69 Escherichia coli UMN026 Escherichia fergusonii ATCC 35469 Escherichia coli ED1a Escherichia coli IAI39 Haemophilus influenzae 86-028NP Haemophilus influenzae PittGG Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Lactobacillus brevis ATCC 367 Lactococcus lactis subsp. lactis Il1403 Lactococcus lactis subsp. cremoris SK11 Lactococcus lactis subsp. cremoris MG1363 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Mesorhizobium loti MAFF303099 Mobiluncus curtisii ATCC 43063 Escherichia coli 042 Bifidobacterium animalis subsp. lactis CNCM I-2494 Pediococcus pentosaceus ATCC 25745 Proteus mirabilis HI4320 Pseudomonas fluorescens Pf0-1 Pseudomonas fluorescens SBW25 Rhizobium leguminosarum bv. viciae 3841 Rhizobium leguminosarum bv. trifolii WSM2304 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella enterica subsp. enterica serovar Newport str. SL254 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 Salmonella enterica subsp. enterica serovar Agona str. SL483 Salmonella enterica subsp. enterica serovar Dublin str. CT02021853 Shigella sonnei Ss046 Spirosoma linguale DSM 74 Yersinia enterocolitica subsp. enterocolitica 8081 Yersinia pseudotuberculosis IP 31758 Bacteroides cellulosilyticus DSM 14838 Bacteroides eggerthii 1_2_48FAA Bacteroides fluxus YIT 12057 Bacteroides graminisolvens Bacteroides graminisolvens DSM 19988 = JCM 15093 Bacteroides intestinalis DSM 17393 Bacteroides nordii CL02T12C05 Bacteroides oleiciplenus YIT 12058 Bacteroides ovatus ATCC 8483 Bacteroides uniformis ATCC 8492 Bacteroides xylanisolvens SD CC 1b Bacteroides sp. 1_1_14 Bacteroides sp. 1_1_30 Bacteroides sp. 2_1_22 Bacteroides sp. 2_2_4 Bacteroides sp. D2 Bacteroides sp. D20 Bacteroides sp. D22 Paraprevotella clara YIT 11840 Paraprevotella xylaniphila YIT 11841 Prevotella buccae ATCC 33574 Alistipes indistinctus YIT 12060 Parabacteroides johnsonii DSM 18315 Parabacteroides sp. D13 Tannerella forsythia Bacteroides dorei DSM 17855 Spirosoma linguale Rhizobium etli Cedecea davisae Cedecea davisae DSM 4568 Citrobacter amalonaticus Citrobacter amalonaticus Y19 Citrobacter freundii Citrobacter youngae ATCC 29220 Enterobacter hormaechei Klebsiella aerogenes Salmonella Salmonella enterica subsp. enterica serovar Typhimurium Trabulsiella guamensis Trabulsiella guamensis ATCC 49490 Hafnia alvei Hafnia alvei ATCC 51873 Yersinia enterocolitica Yersinia pestis Yersinia pseudotuberculosis Actinobacillus pleuropneumoniae Haemophilus haemolyticus Actinomyces urogenitalis DSM 15434 Mobiluncus curtisii Trueperella pyogenes Bifidobacterium stercoris JCM 15918 Bifidobacterium angulatum DSM 20098 = JCM 7096 Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 Bifidobacterium gallicum DSM 20093 = LMG 11596 Bifidobacterium longum subsp. infantis CCUG 52486 Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 Scardovia inopinata F0304 Microbacterium oleivorans Cellulosimicrobium cellulans Streptomyces avermitilis Bacillus altitudinis Bacillus infantis NRRL B-14911 Paenibacillus lactis 154 Enterococcus asini ATCC 700915 Enterococcus casseliflavus ATCC 12755 Enterococcus phoeniculicola ATCC BAA-412 Lactobacillus hilgardii DSM 20176 = ATCC 8290 Lactobacillus antri DSM 16041 Lactobacillus mucosae LM1 Pediococcus acidilactici DSM 20284 Pediococcus pentosaceus Leuconostoc lactis Leuconostoc mesenteroides subsp. cremoris ATCC 19254 Weissella cibaria Weissella paramesenteroides Clostridium sartagoforme AAU1 [Clostridium] bolteae ATCC BAA-613 Lachnospira multipara Ruminococcus callidus ATCC 27760 Ruminococcus champanellensis Subdoligranulum variabile DSM 15176 Streptomyces coelicolor A3(2) Xanthomonas campestris pv. campestris str. ATCC 33913 Xanthomonas campestris pv. campestris str. B100 Xanthomonas campestris pv. campestris str. 8004 Clostridioides difficile 630 Clostridioides difficile NAP08 Bifidobacterium longum subsp. infantis Bifidobacterium longum subsp. longum Lachnoclostridium phytofermentans ISDg Leuconostoc citreum KM20 Acidothermus cellulolyticus 11B Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 Alkaliphilus metalliredigens QYMF Amycolatopsis mediterranei U32 Arthrobacter sp. FB24 Arthrobacter aurescens TC1 Arthrobacter chlorophenolicus A6 Bacillus selenitireducens MLS10 Beutenbergia cavernae DSM 12333 Bifidobacterium dentium Bd1 Caldicellulosiruptor bescii DSM 6725 Catenulispora acidiphila DSM 44928 Cellulomonas flavigena DSM 20109 Clavibacter michiganensis subsp. michiganensis NCPPB 382 Clostridium cellulolyticum H10 Conexibacter woesei DSM 14684 Deinococcus geothermalis DSM 11300 Frankia sp. EuI1c Geobacillus kaustophilus HTA426 Geobacillus thermodenitrificans NG80-2 Jonesia denitrificans DSM 20603 Kribbella flavida DSM 17836 Listeria welshimeri serovar 6b str. SLCC5334 Meiothermus ruber DSM 1279 Mycobacterium vanbaalenii PYR-1 Nakamurella multipartita DSM 44233 Nocardioides sp. JS614 Oceanobacillus iheyensis HTE831 Caldicellulosiruptor saccharolyticus DSM 8903 Thermobaculum terrenum ATCC BAA-798 Pseudonocardia dioxanivorans CB1190 Saccharomonospora viridis DSM 43017 Salinispora tropica CNB-440 Sanguibacter keddieii DSM 10542 Stackebrandtia nassauensis DSM 44728 Streptomyces scabiei 87.22 Streptomyces violaceusniger Tu 4113 Streptosporangium roseum DSM 43021 Thermoanaerobacter sp. X514 Thermoanaerobacter pseudethanolicus ATCC 33223 Thermoanaerobacter italicus Ab9 Thermoanaerobacterium thermosaccharolyticum DSM 571 Thermobispora bispora DSM 43833 Xylanimonas cellulosilytica DSM 15894 Paraburkholderia graminis C4D1M Schaalia odontolytica ATCC 17982 Schaalia turicensis ACS-279-V-Col4 Acidipropionibacterium acidipropionici ATCC 4875 Leuconostoc mesenteroides subsp. cremoris Bacteroides helcogenes P 36-108 Bacteroides salanitronis DSM 18170 Klebsiella aerogenes KCTC 2190 Treponema succinifaciens DSM 2489 Agrobacterium vitis S4 Agrobacterium radiobacter K84 Mannheimia succiniciproducens MBEL55E Bradyrhizobium sp. ORS278 Bradyrhizobium sp. BTAi1 Brucella melitensis bv. 1 str. 16M Brucella abortus bv. 1 str. 9-941 Brucella ovis ATCC 25840 Brucella canis ATCC 23365 Brucella suis ATCC 23445 Brucella abortus S19 Brucella melitensis ATCC 23457 Brucella microti CCM 4915 Burkholderia sp. 383 Burkholderia xenovorans LB400 Burkholderia ambifaria AMMD Burkholderia vietnamiensis G4 Burkholderia cenocepacia MC0-3 Burkholderia ambifaria MC40-6 Burkholderia phymatum STM815 Burkholderia phytofirmans PsJN Burkholderia cenocepacia J2315 Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 Candidatus Koribacter versatilis Ellin345 Cellulophaga algicola DSM 14237 Clostridium lentocellum DSM 5427 Cellvibrio japonicus Ueda107 Cellvibrio gilvus ATCC 13127 Chitinophaga pinensis DSM 2588 Citrobacter rodentium ICC168 Coxiella burnetii Dugway 5J108-111 Cronobacter turicensis z3032 Dickeya dadantii Ech703 Dickeya zeae Ech1591 Dickeya dadantii Ech586 Dickeya dadantii 3937 Dinoroseobacter shibae DFL 12 Enterobacter sp. 638 Enterobacter cloacae SCF1 Erwinia billingiae Eb661 Halorhabdus utahensis DSM 12940 Halothermothrix orenii H 168 Herpetosiphon aurantiacus DSM 785 Isosphaera pallida ATCC 43644 Klebsiella pneumoniae 342 Leadbetterella byssophila DSM 17132 Leifsonia xyli subsp. xyli str. CTCB07 Marinomonas posidonica IVIA-Po-181 Meiothermus silvanus DSM 9946 Microbacterium testaceum StLB037 Novosphingobium aromaticivorans DSM 12444 Xanthomonas axonopodis pv. citri str. 306 Sorangium cellulosum 'So ce 56' Opitutus terrae PB90-1 Rhodobacter capsulatus SB1003 Pantoea ananatis LMG 20103 Pectobacterium atrosepticum SCRI1043 Pectobacterium carotovorum subsp. carotovorum PC1 Pedobacter heparinus DSM 2366 Petrotoga mobilis SJ95 Photobacterium profundum SS9 Photorhabdus luminescens subsp. laumondii TTO1 Pirellula staleyi DSM 6068 Planctomyces limnophilus DSM 3776 Pseudomonas syringae pv. tomato str. DC3000 Pseudomonas syringae pv. phaseolicola 1448A Pseudomonas syringae pv. syringae B728a Rhizobium etli CFN 42 Rhizobium etli CIAT 652 Rhizobium leguminosarum bv. trifolii WSM1325 Rhodopirellula baltica SH 1 Roseiflexus sp. RS-1 Roseiflexus castenholzii DSM 13941 Roseobacter denitrificans OCh 114 Roseobacter litoralis Och 149 Ruegeria pomeroyi DSS-3 Ruegeria sp. TM1040 Saccharophagus degradans 2-40 Sebaldella termitidis ATCC 33386 Shigella flexneri 2a str. 301 Shigella boydii Sb227 Shigella boydii CDC 3083-94 Sinorhizobium meliloti 1021 Sinorhizobium medicae WSM419 Spirochaeta thermophila DSM 6192 Teredinibacter turnerae T7901 Thermotoga petrophila RKU-1 Thermotoga sp. RQ2 Thermotoga neapolitana DSM 4359 Xanthomonas oryzae pv. oryzae KACC10331 Xanthomonas campestris pv. vesicatoria str. 85-10 Xanthomonas oryzae pv. oryzae PXO99A Zunongwangia profunda SM-A87 Atlantibacter hermannii NBRC 105704 Klebsiella michiganensis KCTC 1686

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0018152	L-ribulose 5-phosphate	Xylulose 5-phosphate	L-ribulose-5-phosphate 4-epimerase UlaF	Epimerization	PathBank	31602464
MMDBr0018156	L-ribulose 5-phosphate	Xylulose 5-phosphate	L-ribulose-5-phosphate 4-epimerase SgbE	Epimerization	PathBank	31602464
MMDBr0018464	Xylulose 5-phosphate	D-Sedoheptulose 7-phosphate	Transketolase 1	Transfer of ketol group	PathBank	31602464
MMDBr0019372	D-Xylulose	Xylulose 5-phosphate	Xylulose kinase	Phosphorylation	PathBank	31602464
MMDBr0019614	D-Xylulose	Xylulose 5-phosphate	Xylulose kinase	Phosphorylation	PathBank	31602464
MMDBr0019616	Xylulose 5-phosphate	D-Ribulose 5-phosphate	Ribulose-phosphate 3-epimerase	Epimerization	PathBank	31602464
MMDBr0019618	Xylulose 5-phosphate	D-Sedoheptulose 7-phosphate	Transketolase 1	Transfer of ketol group	PathBank	31602464
MMDBr0019619	D-Erythrose 4-phosphate	D-Glyceraldehyde 3-phosphate	Transketolase 1	Transfer of ketol group	PathBank	31602464
MMDBr0020052	D-Glyceraldehyde 3-phosphate	D-Erythrose 4-phosphate	Transketolase 1	Transfer of ketol group	PathBank	31602464
MMDBr0020054	D-Sedoheptulose 7-phosphate	Xylulose 5-phosphate	Transketolase 1	Transfer of ketol group	PathBank	31602464

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria	Proteobacteria	3	Human feces; Human sputum; Human ; Human unknown; Pig ; Human pleural fluid plaque; Human dental plaque; Human nasal swab; Human stool; Human feces; pleural fluid plaque; bal; Chicken ; Human subgingival plaque; Cattle	Unknown; Metabolic reconstruction
Bacteria/Eubacteria	Firmicutes	404	Human feces; Human pleural fluid plaque; Pig ; Human sputum; Human ; Human subgingival plaque; Human saliva; Human urine; Human mucosa; Human supragingival plaque; Cattle ; Human stool	Metabolic reconstruction
Bacteria/Eubacteria	Proteobacteria	227	Human feces; Human sputum; Human ; Human unknown; Pig ; Human pleural fluid plaque; Human dental plaque; Human nasal swab; Human stool; Human feces; pleural fluid plaque; bal; Chicken ; Human subgingival plaque; Cattle	Unknown; Metabolic reconstruction
Bacteria/Eubacteria	Actinobacteria	133	Human feces; Human sputum; Human bronchial brush; Human nasopharyngeal swab; Human pleural fluid plaque; Human dental plaque; Human ; Human supragingival plaque; Human subgingival plaque; Human mucosa; Human saliva; Cattle	Metabolic reconstruction
Bacteria/Eubacteria	Verrucomicrobia	1	Human ; Human feces	Metabolic reconstruction
Bacteria/Eubacteria	Bacteroidetes	126	Human feces; Human appendix biopsy; Human ; Human stool; Human saliva; Human gastric fluid; Human urine; Human supragingival plaque; Human subgingival plaque	Metabolic reconstruction
Bacteria/Eubacteria	Synergistetes	3	Human feces	Metabolic reconstruction
Bacteria	Firmicutes	2	Human feces; Human pleural fluid plaque; Pig ; Human sputum; Human ; Human subgingival plaque; Human saliva; Human urine; Human mucosa; Human supragingival plaque; Cattle ; Human stool	Metabolic reconstruction
Bacteria/Eubacteria	Spirochaetes	2	Human feces; Human	Metabolic reconstruction
Archaea	Thaumarchaeota	1		Metabolic reconstruction
Bacteria/Eubacteria	Fusobacteria	20	Human feces; Human	Metabolic reconstruction
Archaea	Euryarchaeota	4		Metabolic reconstruction
Bacteria/Eubacteria	Candidatus melainabacteria	1	Human feces	Metabolic reconstruction
Bacteria/Eubacteria	Tenericutes	6	Human feces; Human	Metabolic reconstruction
Bacteria/Eubacteria	Planctomycetes	1	Human feces	Metabolic reconstruction
Archaea	Crenarchaeota	1		Metabolic reconstruction
Bacteria	Synergistetes	1	Human feces	Metabolic reconstruction
Bacteria/Eubacteria	Aquificae	1
Bacteria/Eubacteria	Cyanobacteria	1
Eukaryota/Fungi	Ascomycota	21	Human feces; Human saliva; Human supragingival plaque	Unknown
Archaea/Archaea	Euryarchaeota	1		Metabolic reconstruction
Bacteria	Actinobacteria	4	Human feces; Human sputum; Human bronchial brush; Human nasopharyngeal swab; Human pleural fluid plaque; Human dental plaque; Human ; Human supragingival plaque; Human subgingival plaque; Human mucosa; Human saliva; Cattle	Metabolic reconstruction
Bacteria/Eubacteria	Chlamydiae	3	Human
Eukaryota/Fungi	Microsporidia	1
Bacteria	nah	1

Exposure Sources

Other Exposures

Source Type	Data Source	Reference
Drugs - Antimicrobial	U.S. Environmental Protection Agency	CompTox
Cosmetics	U.S. Environmental Protection Agency	CompTox
Domestics	U.S. Environmental Protection Agency	CompTox

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference
Human Feces	Detected but not Quantified									HMDB
Human Cellular cytoplasm	Detected and Quantified	0.43				uM	Adult (>18 years old)	Both	Normal	HMDB	15882454

External Links

HMDB ID

HMDB0000868

DrugBank ID

DB04034

Phenol Explorer Compound ID

Not Available

FooDB ID

KNApSAcK ID

Chemspider ID

KEGG Compound ID

BioCyc ID

BiGG ID

Wikipedia Link

METLIN ID

PubChem Compound

PDB ID

Not Available

ChEBI ID

16332

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

Williams DG: Effect of added xylulose-5-phosphate on the assay of erythrocyte transketolase. Clin Chem. 1977 Jul;23(7):1368. [PubMed:872397 ]
Himmo SD, Thomson M, Gubler CJ: Isolation of transketolase from human erythrocytes. Prep Biochem. 1988;18(3):261-76. doi: 10.1080/00327488808062528. [PubMed:3237644 ]
Veech RL: A humble hexose monophosphate pathway metabolite regulates short- and long-term control of lipogenesis. Proc Natl Acad Sci U S A. 2003 May 13;100(10):5578-80. doi: 10.1073/pnas.1132039100. Epub 2003 Apr 29. [PubMed:12721358 ]
Nakayama Y, Kinoshita A, Tomita M: Dynamic simulation of red blood cell metabolism and its application to the analysis of a pathological condition. Theor Biol Med Model. 2005 May 9;2:18. doi: 10.1186/1742-4682-2-18. [PubMed:15882454 ]
Sanchez B, Champomier-Verges MC, Anglade P, Baraige F, de Los Reyes-Gavilan CG, Margolles A, Zagorec M: Proteomic analysis of global changes in protein expression during bile salt exposure of Bifidobacterium longum NCIMB 8809. J Bacteriol. 2005 Aug;187(16):5799-808. doi: 10.1128/JB.187.16.5799-5808.2005. [PubMed:16077128 ]

Showing metabocard for Xylulose 5-phosphate (MMDBc0029819)

MOL for #<Metabolite:0x00007faddce09340>

3D MOL for #<Metabolite:0x00007faddce09340>

3D SDF for #<Metabolite:0x00007faddce09340>

3D-SDF for #<Metabolite:0x00007faddce09340>

PDB for #<Metabolite:0x00007faddce09340>

3D PDB for #<Metabolite:0x00007faddce09340>

SMILES for #<Metabolite:0x00007faddce09340>

INCHI for #<Metabolite:0x00007faddce09340>

Structure for #<Metabolite:0x00007faddce09340>

3D Structure for #<Metabolite:0x00007faddce09340>