MiMeDB: Showing metabocard for L-ribulose 5-phosphate (MMDBc0032117)

Microbial

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-11-18 02:03:07 UTC

Update Date

2022-08-31 18:30:41 UTC

Metabolite ID

MMDBc0032117

Metabolite Identification

Common Name

L-ribulose 5-phosphate

Description

L-Ribulose 5-phosphate is a member of the chemical class known as Pentoses. These are monosaccharides in which the carbohydrate moiety contains five carbon atoms. In Escherichia coli, RpiA catalyzes the interconversion of ribose-5-phosphate and ribulose-5-phosphate and is a key enzyme in the pentose phosphate pathway. (PMID 12182339 ) Interconversion of D-ribose-5-phosphate (R5P) and D-ribulose-5-phosphate is an important step in the pentose phosphate pathway. (PMID 18640127 ) A key player in LPS synthesis is the enzyme D-arabinose-5-phosphate isomerase (API), which catalyzes the reversible isomerization of D-ribulose-5-phosphate to D-arabinose-5-phosphate, a precursor of 3-deoxy-D-manno-octulosonate that is an essential residue of the LPS inner core. (PMID 20954237 ) Dihydroxybutanone phosphate synthase (DS) catalyzes a commitment step in riboflavin biosynthesis where ribulose 5-phosphate is converted to dihydroxybutanone phosphate and formate. (PMID 11053863 ) Ribose-5-phosphate isomerase A (RpiA) plays an important role in interconverting between ribose-5-phosphate (R5P) and ribulose-5-phosphate in the pentose phosphate pathway and the Calvin cycle. (PMID 19214439 )

Structure

MOL SDF PDB SMILES InChI


  Mrv0541 04061520222D          

 14 13  0  0  0  0            999 V2000
   -2.8578   -0.2062    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    0.2062    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -0.2062    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -1.0312    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7144    0.2062    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7144    1.0312    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -0.2062    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0000   -1.0312    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7144    0.2062    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.2062    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    0.2062    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    2.8578    0.6187    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    2.5559   -0.5082    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    1.7309    0.9207    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  1  0  0  0
  5  7  1  0  0  0  0
  7  8  1  6  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
 11 14  2  0  0  0  0
M  CHG  2  12  -1  13  -1
M  END
> <DATABASE_ID>
MMDBc0032117

> <DATABASE_NAME>
MIME

> <SMILES>
OCC(=O)[C@@H](O)[C@@H](O)COP([O-])([O-])=O

> <INCHI_IDENTIFIER>
InChI=1S/C5H11O8P/c6-1-3(7)5(9)4(8)2-13-14(10,11)12/h4-6,8-9H,1-2H2,(H2,10,11,12)/p-2/t4-,5+/m0/s1

> <INCHI_KEY>
FNZLKVNUWIIPSJ-CRCLSJGQSA-L

> <FORMULA>
C5H9O8P

> <MOLECULAR_WEIGHT>
228.094

> <EXACT_MASS>
228.004601408

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
23

> <JCHEM_AVERAGE_POLARIZABILITY>
17.58827706808278

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
-2

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3S,4S)-1,3,4-trihydroxy-5-(phosphonatooxy)pentan-2-one

> <ALOGPS_LOGP>
-1.86

> <JCHEM_LOGP>
-2.7602629813333333

> <ALOGPS_LOGS>
-0.63

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
6.504370847667953

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.4785529591465414

> <JCHEM_PKA_STRONGEST_BASIC>
-3.3276267100529333

> <JCHEM_POLAR_SURFACE_AREA>
150.18

> <JCHEM_REFRACTIVITY>
40.2288

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
6.23e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
L-ribulose 5-phosphate(2-)

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-APR-15         0                                  
HETATM    1  O   UNK     0      -5.335  -0.385   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0      -4.001   0.385   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.667  -0.385   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      -2.667  -1.925   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0      -1.334   0.385   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0      -1.334   1.925   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       0.000  -0.385   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       0.000  -1.925   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       1.334   0.385   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       2.667  -0.385   0.000  0.00  0.00           O+0
HETATM   11  P   UNK     0       4.001   0.385   0.000  0.00  0.00           P+0
HETATM   12  O   UNK     0       5.335   1.155   0.000  0.00  0.00           O-1
HETATM   13  O   UNK     0       4.771  -0.949   0.000  0.00  0.00           O-1
HETATM   14  O   UNK     0       3.231   1.719   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   13   14                                             
CONECT   12   11                                                            
CONECT   13   11                                                            
CONECT   14   11                                                            
MASTER        0    0    0    0    0    0    0    0   14    0   26    0
END

Synonyms

Value	Source
5-O-Phosphonato-L-erythro-pent-2-ulose	ChEBI
5-O-Phosphonato-L-ribulose	ChEBI
L-Ribulose 5-phosphate	ChEBI
L-Ribulose 5-phosphate dianion	ChEBI
L-Ribulose 5-phosphoric acid	Generator
L-Ribulose 5-phosphoric acid dianion	Generator
L-Ribulose 5-phosphoric acid	Generator

Molecular Formula

C₅H₉O₈P

Average Mass

228.094

Monoisotopic Mass

228.004601408

IUPAC Name

(3S,4S)-1,3,4-trihydroxy-5-(phosphonatooxy)pentan-2-one

Traditional Name

L-ribulose 5-phosphate(2-)

CAS Registry Number

Not Available

SMILES

OCC(=O)[C@@H](O)[C@@H](O)COP([O-])([O-])=O

InChI Identifier

InChI=1S/C5H11O8P/c6-1-3(7)5(9)4(8)2-13-14(10,11)12/h4-6,8-9H,1-2H2,(H2,10,11,12)/p-2/t4-,5+/m0/s1

InChI Key

FNZLKVNUWIIPSJ-CRCLSJGQSA-L

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pentose phosphates. These are carbohydrate derivatives containing a pentose substituted by one or more phosphate groups.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Pentose phosphates

Alternative Parents

Substituents

Pentose phosphate
Pentose-5-phosphate
Monosaccharide phosphate
Acyloin
Beta-hydroxy ketone
Organic phosphoric acid derivative
Phosphoric acid ester
Alkyl phosphate
Alpha-hydroxy ketone
Ketone
Secondary alcohol
Polyol
Hydrocarbon derivative
Organic oxide
Carbonyl group
Primary alcohol
Alcohol
Organic anion
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

organophosphate oxoanion (CHEBI:58226 )

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	62.3 g/L	ALOGPS
logP	-1.9	ALOGPS
logP	-2.8	ChemAxon
logS	-0.63	ALOGPS
pKa (Strongest Acidic)	1.48	ChemAxon
pKa (Strongest Basic)	-3.3	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	150.18 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	40.23 m³·mol⁻¹	ChemAxon
Polarizability	17.59 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	splash10-004i-0190000000-ef3f7bd4cdeda4061c48	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	splash10-014i-9880000000-eaef27e08562aab3ca0c	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	splash10-07vl-9500000000-8951ba09bc0e89c6cc60	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	splash10-004r-9080000000-6604b3c77ebb8474d36a	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	splash10-0a4r-9130000000-eff140f298e64291a4b2	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	splash10-0a4l-9000000000-1245d9ba8d7374f9a253	2015-09-15	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)		2022-08-20	View Spectrum

Chromatographic Retention Times and Retention Indices

Retention Times

Chromatography Type	Technique	Column	Deposition Date	Retention Time (s)
Liquid Chromatography	HILIC	Waters Acquity UPLC-BEH Amide column (eluted)	2025-10-23	416.1
Liquid Chromatography	HILIC	Accucore 150 Amide HILIC (eluted)	2025-10-23	276.3
Liquid Chromatography	Reversed-phase	Hypersil Gold 1.9 µm C18 (void)	2025-10-23	50.1
Liquid Chromatography	Reversed-phase	Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) (eluted)	2025-10-23	309.4
Liquid Chromatography	Reversed-phase	XBridge C18 3.5u 2.1x50 mm (eluted)	2025-10-23	260.9
Liquid Chromatography	Reversed-phase	Ascentis Express C18 (void)	2025-10-23	322.1
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (void)	2025-10-23	795.3
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-23	579.1
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC (eluted)	2025-10-23	933.0
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (eluted)	2025-10-23	165.4
Liquid Chromatography	HILIC	Merck SeQuant ZIC-HILIC (eluted)	2025-10-23	247.1
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC HSS T3 C18 (void)	2025-10-23	181.9
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (eluted)	2025-10-23	38.8
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	422.5
Liquid Chromatography	HILIC	Merck SeQuant ZIC-pHILIC column (eluted)	2025-10-23	691.1
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (void)	2025-10-23	68.6
Liquid Chromatography	Reversed-phase	Waters ACQUITY UPLC BEH C18 (void)	2025-10-23	225.8
Liquid Chromatography	Reversed-phase	Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex (eluted)	2025-10-23	868.1
Liquid Chromatography	Reversed-phase	Waters Atlantis T3 (2.1 x 150 mm, 5 um) (eluted)	2025-10-23	624.6

Retention Indices

Chromatography Type	Peak Label	SMILES	Stationary Phase	Deposition Date	Retention Index
Gas Chromatography	L-ribulose 5-phosphate_TMS_1	C[Si](C)(C)OCC(=O)[C@@H](O)[C@@H](O)COP(=O)([O-])[O-]	standard non polar	2025-10-24	1879.89
Gas Chromatography	L-ribulose 5-phosphate_TMS_2	C[Si](C)(C)O[C@H](C(=O)CO)[C@@H](O)COP(=O)([O-])[O-]	standard non polar	2025-10-24	2074.94
Gas Chromatography	L-ribulose 5-phosphate_TMS_3	C[Si](C)(C)O[C@@H](COP(=O)([O-])[O-])[C@H](O)C(=O)CO	standard non polar	2025-10-24	2266.77
Gas Chromatography	L-ribulose 5-phosphate_TMS_4	C[Si](C)(C)OC(CO)=C(O)[C@@H](O)COP(=O)([O-])[O-]	standard non polar	2025-10-24	1743.56
Gas Chromatography	L-ribulose 5-phosphate_TMS_5	C[Si](C)(C)OC(=CO)[C@@H](O)[C@@H](O)COP(=O)([O-])[O-]	standard non polar	2025-10-24	2198.18
Gas Chromatography	L-ribulose 5-phosphate_TMS_6	C[Si](C)(C)OCC(=O)[C@@H](O[Si](C)(C)C)[C@@H](O)COP(=O)([O-])[O-]	standard non polar	2025-10-24	1829.02
Gas Chromatography	L-ribulose 5-phosphate_TMS_7	C[Si](C)(C)OCC(=O)[C@@H](O)[C@H](COP(=O)([O-])[O-])O[Si](C)(C)C	standard non polar	2025-10-24	2171.76
Gas Chromatography	L-ribulose 5-phosphate_TMS_8	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O)[C@@H](O)COP(=O)([O-])[O-]	standard non polar	2025-10-24	2068.03
Gas Chromatography	L-ribulose 5-phosphate_TMS_9	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O)[C@@H](O)COP(=O)([O-])[O-]	standard non polar	2025-10-24	1824.67
Gas Chromatography	L-ribulose 5-phosphate_TMS_10	C[Si](C)(C)O[C@@H](COP(=O)([O-])[O-])[C@H](O[Si](C)(C)C)C(=O)CO	standard non polar	2025-10-24	2421.82
Gas Chromatography	L-ribulose 5-phosphate_TMS_11	C[Si](C)(C)OC(CO)=C(O[Si](C)(C)C)[C@@H](O)COP(=O)([O-])[O-]	standard non polar	2025-10-24	2014.83
Gas Chromatography	L-ribulose 5-phosphate_TMS_12	C[Si](C)(C)OC(=CO)[C@@H](O[Si](C)(C)C)[C@@H](O)COP(=O)([O-])[O-]	standard non polar	2025-10-24	1822.41
Gas Chromatography	L-ribulose 5-phosphate_TMS_13	C[Si](C)(C)OC(CO)=C(O)[C@H](COP(=O)([O-])[O-])O[Si](C)(C)C	standard non polar	2025-10-24	2025.33
Gas Chromatography	L-ribulose 5-phosphate_TMS_14	C[Si](C)(C)OC(=CO)[C@@H](O)[C@H](COP(=O)([O-])[O-])O[Si](C)(C)C	standard non polar	2025-10-24	1753.93
Gas Chromatography	L-ribulose 5-phosphate_TMS_15	C[Si](C)(C)OCC(=O)[C@@H](O[Si](C)(C)C)[C@H](COP(=O)([O-])[O-])O[Si](C)(C)C	standard non polar	2025-10-24	1141.26
Gas Chromatography	L-ribulose 5-phosphate_TMS_16	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O[Si](C)(C)C)[C@@H](O)COP(=O)([O-])[O-]	standard non polar	2025-10-24	2341.4
Gas Chromatography	L-ribulose 5-phosphate_TMS_17	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)[C@@H](O)COP(=O)([O-])[O-]	standard non polar	2025-10-24	2178.99
Gas Chromatography	L-ribulose 5-phosphate_TMS_18	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O)[C@H](COP(=O)([O-])[O-])O[Si](C)(C)C	standard non polar	2025-10-24	2005.1
Gas Chromatography	L-ribulose 5-phosphate_TMS_19	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O)[C@H](COP(=O)([O-])[O-])O[Si](C)(C)C	standard non polar	2025-10-24	2221.23
Gas Chromatography	L-ribulose 5-phosphate_TMS_20	C[Si](C)(C)OC(CO)=C(O[Si](C)(C)C)[C@H](COP(=O)([O-])[O-])O[Si](C)(C)C	standard non polar	2025-10-24	1915.68
Gas Chromatography	L-ribulose 5-phosphate_TMS_21	C[Si](C)(C)OC(=CO)[C@@H](O[Si](C)(C)C)[C@H](COP(=O)([O-])[O-])O[Si](C)(C)C	standard non polar	2025-10-24	1878.15
Gas Chromatography	L-ribulose 5-phosphate_TMS_22	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O[Si](C)(C)C)[C@H](COP(=O)([O-])[O-])O[Si](C)(C)C	standard non polar	2025-10-24	1487.42
Gas Chromatography	L-ribulose 5-phosphate_TMS_23	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)[C@H](COP(=O)([O-])[O-])O[Si](C)(C)C	standard non polar	2025-10-24	1724.18
Gas Chromatography	L-ribulose 5-phosphate_TMS_1	C[Si](C)(C)OCC(=O)[C@@H](O)[C@@H](O)COP(=O)([O-])[O-]	standard polar	2025-10-24	2050.53
Gas Chromatography	L-ribulose 5-phosphate_TMS_2	C[Si](C)(C)O[C@H](C(=O)CO)[C@@H](O)COP(=O)([O-])[O-]	standard polar	2025-10-24	1369.86
Gas Chromatography	L-ribulose 5-phosphate_TMS_3	C[Si](C)(C)O[C@@H](COP(=O)([O-])[O-])[C@H](O)C(=O)CO	standard polar	2025-10-24	2643.76
Gas Chromatography	L-ribulose 5-phosphate_TMS_4	C[Si](C)(C)OC(CO)=C(O)[C@@H](O)COP(=O)([O-])[O-]	standard polar	2025-10-24	1444.4
Gas Chromatography	L-ribulose 5-phosphate_TMS_5	C[Si](C)(C)OC(=CO)[C@@H](O)[C@@H](O)COP(=O)([O-])[O-]	standard polar	2025-10-24	1929.76
Gas Chromatography	L-ribulose 5-phosphate_TMS_6	C[Si](C)(C)OCC(=O)[C@@H](O[Si](C)(C)C)[C@@H](O)COP(=O)([O-])[O-]	standard polar	2025-10-24	1919.63
Gas Chromatography	L-ribulose 5-phosphate_TMS_7	C[Si](C)(C)OCC(=O)[C@@H](O)[C@H](COP(=O)([O-])[O-])O[Si](C)(C)C	standard polar	2025-10-24	1790.73
Gas Chromatography	L-ribulose 5-phosphate_TMS_8	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O)[C@@H](O)COP(=O)([O-])[O-]	standard polar	2025-10-24	2764.58
Gas Chromatography	L-ribulose 5-phosphate_TMS_9	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O)[C@@H](O)COP(=O)([O-])[O-]	standard polar	2025-10-24	2139.2
Gas Chromatography	L-ribulose 5-phosphate_TMS_10	C[Si](C)(C)O[C@@H](COP(=O)([O-])[O-])[C@H](O[Si](C)(C)C)C(=O)CO	standard polar	2025-10-24	2208.01
Gas Chromatography	L-ribulose 5-phosphate_TMS_11	C[Si](C)(C)OC(CO)=C(O[Si](C)(C)C)[C@@H](O)COP(=O)([O-])[O-]	standard polar	2025-10-24	2350.98
Gas Chromatography	L-ribulose 5-phosphate_TMS_12	C[Si](C)(C)OC(=CO)[C@@H](O[Si](C)(C)C)[C@@H](O)COP(=O)([O-])[O-]	standard polar	2025-10-24	1446.38
Gas Chromatography	L-ribulose 5-phosphate_TMS_13	C[Si](C)(C)OC(CO)=C(O)[C@H](COP(=O)([O-])[O-])O[Si](C)(C)C	standard polar	2025-10-24	2372.22
Gas Chromatography	L-ribulose 5-phosphate_TMS_14	C[Si](C)(C)OC(=CO)[C@@H](O)[C@H](COP(=O)([O-])[O-])O[Si](C)(C)C	standard polar	2025-10-24	2274.49
Gas Chromatography	L-ribulose 5-phosphate_TMS_15	C[Si](C)(C)OCC(=O)[C@@H](O[Si](C)(C)C)[C@H](COP(=O)([O-])[O-])O[Si](C)(C)C	standard polar	2025-10-24	2293.24
Gas Chromatography	L-ribulose 5-phosphate_TMS_16	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O[Si](C)(C)C)[C@@H](O)COP(=O)([O-])[O-]	standard polar	2025-10-24	2083.03
Gas Chromatography	L-ribulose 5-phosphate_TMS_17	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)[C@@H](O)COP(=O)([O-])[O-]	standard polar	2025-10-24	1217.9
Gas Chromatography	L-ribulose 5-phosphate_TMS_18	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O)[C@H](COP(=O)([O-])[O-])O[Si](C)(C)C	standard polar	2025-10-24	2798.29
Gas Chromatography	L-ribulose 5-phosphate_TMS_19	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O)[C@H](COP(=O)([O-])[O-])O[Si](C)(C)C	standard polar	2025-10-24	1789.46
Gas Chromatography	L-ribulose 5-phosphate_TMS_20	C[Si](C)(C)OC(CO)=C(O[Si](C)(C)C)[C@H](COP(=O)([O-])[O-])O[Si](C)(C)C	standard polar	2025-10-24	1634.14
Gas Chromatography	L-ribulose 5-phosphate_TMS_21	C[Si](C)(C)OC(=CO)[C@@H](O[Si](C)(C)C)[C@H](COP(=O)([O-])[O-])O[Si](C)(C)C	standard polar	2025-10-24	2649.79
Gas Chromatography	L-ribulose 5-phosphate_TMS_22	C[Si](C)(C)OCC(O[Si](C)(C)C)=C(O[Si](C)(C)C)[C@H](COP(=O)([O-])[O-])O[Si](C)(C)C	standard polar	2025-10-24	1952.63
Gas Chromatography	L-ribulose 5-phosphate_TMS_23	C[Si](C)(C)OC=C(O[Si](C)(C)C)[C@@H](O[Si](C)(C)C)[C@H](COP(=O)([O-])[O-])O[Si](C)(C)C	standard polar	2025-10-24	2523.48

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Microbial Pathways

Pathways

Name	SMPDB/PathBank	Species
Ara operon Inactivation (Positive regulation of araBAD)		Escherichia coli Escherichia coli SMS-3-5 Escherichia coli UTI89 Escherichia coli 55989 Escherichia coli SE11 Actinobacillus succinogenes 130Z Escherichia coli CFT073 Bacillus subtilis Klebsiella pneumoniae Bacillus amyloliquefaciens Roseburia intestinalis L1-82 Clostridium saccharoperbutylacetonicum N1-4(HMT) Salmonella enterica Clostridium acetobutylicum ATCC 824 Lactobacillus fermentum IFO 3956 Anaerostipes hadrus Bacillus halodurans C-125 Bacillus timonensis 10403023 Bacteroides thetaiotaomicron Bacteroides thetaiotaomicron VPI-5482 Blautia obeum A2-162 Blautia obeum ATCC 29174 Clostridium beijerinckii NCIMB 8052 Clostridium saccharolyticum Coprococcus catus GD/7 Dorea formicigenerans ATCC 27755 Dysgonomonas gadei ATCC BAA-286 Limosilactobacillus fermentum Lactobacillus reuteri Megamonas hypermegale Odoribacter splanchnicus DSM 20712 Roseburia hominis A2-183 Ruminococcus torques L2-14 Spirochaeta thermophila Citrobacter koseri Shigella boydii Shigella dysenteriae Shigella flexneri Shigella sonnei Aeromonas hydrophila Bacteroides uniformis Leuconostoc mesenteroides Ruminococcus albus Enterococcus gallinarum Bacillus licheniformis Priestia megaterium Bacillus pumilus Lactobacillus plantarum Lactobacillus sakei Thermotoga neapolitana Acidothermus cellulolyticus Enterococcus avium Enterococcus casseliflavus Actinosynnema mirum Mitsuokella multacida Blautia hydrogenotrophica Enterobacter cancerogenus Bacillus clausii Bacillus selenitireducens Dorea longicatena Citrobacter youngae Marvinbryantia formatexigens Escherichia albertii Subdoligranulum variabile Lactobacillus antri Coprococcus comes Bacteroides oleiciplenus Blautia obeum Clostridium beijerinckii Dorea formicigenerans Dysgonomonas gadei Enterococcus faecium Klebsiella variicola Lactococcus lactis Leuconostoc citreum Odoribacter splanchnicus Aeromonas hydrophila subsp. hydrophila ATCC 7966 Bacillus megaterium QM B1551 Bacillus licheniformis ATCC 14580 Bacillus clausii KSM-K16 Bacillus amyloliquefaciens FZB42 Bacillus pumilus SAFR-032 Priestia megaterium DSM 319 Bacillus subtilis subsp. spizizenii str. W23 Bacillus amyloliquefaciens DSM 7 Citrobacter koseri ATCC BAA-895 Cronobacter sakazakii ATCC BAA-894 Dyadobacter fermentans DSM 18053 Enterobacter cloacae subsp. cloacae ATCC 13047 Escherichia coli APEC O1 Escherichia coli E24377A Escherichia coli O127:H6 str. E2348/69 Escherichia coli UMN026 Escherichia fergusonii ATCC 35469 Escherichia coli ED1a Escherichia coli IAI39 Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Lactobacillus plantarum WCFS1 Lactobacillus sakei subsp. sakei 23K Lactobacillus brevis ATCC 367 Lactobacillus reuteri DSM 20016 Lactobacillus reuteri SD2112 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Escherichia coli 042 Pediococcus pentosaceus ATCC 25745 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 Rhizobium leguminosarum bv. viciae 3841 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella enterica subsp. enterica serovar Newport str. SL254 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 Salmonella enterica subsp. enterica serovar Agona str. SL483 Salmonella enterica subsp. enterica serovar Dublin str. CT02021853 Shigella sonnei Ss046 Shigella dysenteriae Sd197 Shigella flexneri 5 str. 8401 Spirosoma linguale DSM 74 Vibrio parahaemolyticus RIMD 2210633 Yersinia enterocolitica subsp. enterocolitica 8081 Yersinia pseudotuberculosis IP 31758 Bacteroides graminisolvens Bacteroides graminisolvens DSM 19988 = JCM 15093 Bacteroides oleiciplenus YIT 12058 Bacteroides uniformis ATCC 8492 Bacteroides sp. 1_1_14 Bacteroides sp. D2 Bacteroides sp. D20 Parabacteroides johnsonii DSM 18315 Spirosoma linguale Aeromonas caviae Aeromonas media Aeromonas veronii Succinivibrio dextrinosolvens Citrobacter amalonaticus Citrobacter amalonaticus Y19 Citrobacter freundii Citrobacter youngae ATCC 29220 Enterobacter hormaechei Escherichia albertii TW07627 Klebsiella aerogenes Salmonella Salmonella enterica subsp. enterica serovar Typhimurium Trabulsiella guamensis Trabulsiella guamensis ATCC 49490 Hafnia alvei Hafnia alvei ATCC 51873 Yersinia enterocolitica Yersinia pestis Yersinia pseudotuberculosis Grimontia hollisae CIP 101886 Vibrio fluvialis Vibrio fluvialis PG41 Vibrio parahaemolyticus Olsenella profusa F0195 Bacillus altitudinis Paenibacillus lactis 154 Enterococcus casseliflavus ATCC 12755 Enterococcus phoeniculicola ATCC BAA-412 Lactobacillus antri DSM 16041 Lactobacillus mucosae LM1 Lactobacillus reuteri CF48-3A Lactobacillus reuteri MM4-1A Pediococcus acidilactici DSM 20284 Pediococcus pentosaceus Leuconostoc lactis Weissella cibaria Blautia hydrogenotrophica DSM 10507 Blautia wexlerae Coprococcus comes ATCC 27758 Dorea longicatena DSM 13814 Clostridium asparagiforme DSM 15981 [Clostridium] bolteae ATCC BAA-613 Clostridium citroniae WAL-17108 [Clostridium] hylemonae DSM 15053 [Clostridium] symbiosum WAL-14163 Pseudoflavonifractor capillosus ATCC 29799 Subdoligranulum variabile DSM 15176 Mitsuokella multacida DSM 20544 Leuconostoc citreum KM20 Acidothermus cellulolyticus 11B Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 Amycolatopsis mediterranei U32 Anoxybacillus flavithermus WK1 Arthrobacter sp. FB24 Arthrobacter aurescens TC1 Arthrobacter chlorophenolicus A6 Bacillus selenitireducens MLS10 Beutenbergia cavernae DSM 12333 Catenulispora acidiphila DSM 44928 Clavibacter michiganensis subsp. michiganensis NCPPB 382 Clostridium cellulolyticum H10 Frankia sp. EuI1c Geobacillus kaustophilus HTA426 Geobacillus thermodenitrificans NG80-2 Kribbella flavida DSM 17836 Nocardioides sp. JS614 Oceanobacillus iheyensis HTE831 Sanguibacter keddieii DSM 10542 Stackebrandtia nassauensis DSM 44728 Streptosporangium roseum DSM 43021 Thermoanaerobacter italicus Ab9 Thermoanaerobacterium thermosaccharolyticum DSM 571 Acidipropionibacterium acidipropionici ATCC 4875 Klebsiella aerogenes KCTC 2190 Aeromonas salmonicida subsp. salmonicida A449
Ascorbate Metabolism
L-Arabinose Degradation I		Escherichia coli Escherichia coli SMS-3-5 Escherichia coli UTI89 Escherichia coli 55989 Escherichia coli SE11 Actinobacillus succinogenes 130Z Escherichia coli CFT073 Bacillus subtilis Klebsiella pneumoniae Bacillus amyloliquefaciens Roseburia intestinalis L1-82 Clostridium saccharoperbutylacetonicum N1-4(HMT) Salmonella enterica Clostridium acetobutylicum ATCC 824 Lactobacillus fermentum IFO 3956 Anaerostipes hadrus Bacillus halodurans C-125 Bacillus timonensis 10403023 Bacteroides thetaiotaomicron Bacteroides thetaiotaomicron VPI-5482 Blautia obeum A2-162 Blautia obeum ATCC 29174 Clostridium beijerinckii NCIMB 8052 Clostridium saccharolyticum Coprococcus catus GD/7 Dorea formicigenerans ATCC 27755 Dysgonomonas gadei ATCC BAA-286 Limosilactobacillus fermentum Lactobacillus reuteri Megamonas hypermegale Odoribacter splanchnicus DSM 20712 Roseburia hominis A2-183 Ruminococcus torques L2-14 Spirochaeta thermophila Citrobacter koseri Shigella boydii Shigella dysenteriae Shigella flexneri Shigella sonnei Aeromonas hydrophila Bacteroides uniformis Leuconostoc mesenteroides Ruminococcus albus Enterococcus gallinarum Bacillus licheniformis Priestia megaterium Bacillus pumilus Lactobacillus plantarum Lactobacillus sakei Thermotoga neapolitana Acidothermus cellulolyticus Enterococcus avium Enterococcus casseliflavus Actinosynnema mirum Mitsuokella multacida Blautia hydrogenotrophica Enterobacter cancerogenus Bacillus clausii Bacillus selenitireducens Dorea longicatena Citrobacter youngae Marvinbryantia formatexigens Escherichia albertii Subdoligranulum variabile Lactobacillus antri Coprococcus comes Bacteroides oleiciplenus Blautia obeum Clostridium beijerinckii Dorea formicigenerans Dysgonomonas gadei Enterococcus faecium Klebsiella variicola Lactococcus lactis Leuconostoc citreum Odoribacter splanchnicus Aeromonas hydrophila subsp. hydrophila ATCC 7966 Bacillus megaterium QM B1551 Bacillus licheniformis ATCC 14580 Bacillus clausii KSM-K16 Bacillus amyloliquefaciens FZB42 Bacillus pumilus SAFR-032 Priestia megaterium DSM 319 Bacillus subtilis subsp. spizizenii str. W23 Bacillus amyloliquefaciens DSM 7 Citrobacter koseri ATCC BAA-895 Cronobacter sakazakii ATCC BAA-894 Dyadobacter fermentans DSM 18053 Enterobacter cloacae subsp. cloacae ATCC 13047 Escherichia coli APEC O1 Escherichia coli E24377A Escherichia coli O127:H6 str. E2348/69 Escherichia coli UMN026 Escherichia fergusonii ATCC 35469 Escherichia coli ED1a Escherichia coli IAI39 Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Lactobacillus plantarum WCFS1 Lactobacillus sakei subsp. sakei 23K Lactobacillus brevis ATCC 367 Lactobacillus reuteri DSM 20016 Lactobacillus reuteri SD2112 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Escherichia coli 042 Pediococcus pentosaceus ATCC 25745 Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 Rhizobium leguminosarum bv. viciae 3841 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella enterica subsp. enterica serovar Newport str. SL254 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 Salmonella enterica subsp. enterica serovar Agona str. SL483 Salmonella enterica subsp. enterica serovar Dublin str. CT02021853 Shigella sonnei Ss046 Shigella dysenteriae Sd197 Shigella flexneri 5 str. 8401 Spirosoma linguale DSM 74 Vibrio parahaemolyticus RIMD 2210633 Yersinia enterocolitica subsp. enterocolitica 8081 Yersinia pseudotuberculosis IP 31758 Bacteroides graminisolvens Bacteroides graminisolvens DSM 19988 = JCM 15093 Bacteroides oleiciplenus YIT 12058 Bacteroides uniformis ATCC 8492 Bacteroides sp. 1_1_14 Bacteroides sp. D2 Bacteroides sp. D20 Parabacteroides johnsonii DSM 18315 Spirosoma linguale Aeromonas caviae Aeromonas media Aeromonas veronii Succinivibrio dextrinosolvens Citrobacter amalonaticus Citrobacter amalonaticus Y19 Citrobacter freundii Citrobacter youngae ATCC 29220 Enterobacter hormaechei Escherichia albertii TW07627 Klebsiella aerogenes Salmonella Salmonella enterica subsp. enterica serovar Typhimurium Trabulsiella guamensis Trabulsiella guamensis ATCC 49490 Hafnia alvei Hafnia alvei ATCC 51873 Yersinia enterocolitica Yersinia pestis Yersinia pseudotuberculosis Grimontia hollisae CIP 101886 Vibrio fluvialis Vibrio fluvialis PG41 Vibrio parahaemolyticus Olsenella profusa F0195 Bacillus altitudinis Paenibacillus lactis 154 Enterococcus casseliflavus ATCC 12755 Enterococcus phoeniculicola ATCC BAA-412 Lactobacillus antri DSM 16041 Lactobacillus mucosae LM1 Lactobacillus reuteri CF48-3A Lactobacillus reuteri MM4-1A Pediococcus acidilactici DSM 20284 Pediococcus pentosaceus Leuconostoc lactis Weissella cibaria Blautia hydrogenotrophica DSM 10507 Blautia wexlerae Coprococcus comes ATCC 27758 Dorea longicatena DSM 13814 Clostridium asparagiforme DSM 15981 [Clostridium] bolteae ATCC BAA-613 Clostridium citroniae WAL-17108 [Clostridium] hylemonae DSM 15053 [Clostridium] symbiosum WAL-14163 Pseudoflavonifractor capillosus ATCC 29799 Subdoligranulum variabile DSM 15176 Mitsuokella multacida DSM 20544 Leuconostoc citreum KM20 Acidothermus cellulolyticus 11B Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 Amycolatopsis mediterranei U32 Anoxybacillus flavithermus WK1 Arthrobacter sp. FB24 Arthrobacter aurescens TC1 Arthrobacter chlorophenolicus A6 Bacillus selenitireducens MLS10 Beutenbergia cavernae DSM 12333 Catenulispora acidiphila DSM 44928 Clavibacter michiganensis subsp. michiganensis NCPPB 382 Clostridium cellulolyticum H10 Frankia sp. EuI1c Geobacillus kaustophilus HTA426 Geobacillus thermodenitrificans NG80-2 Kribbella flavida DSM 17836 Nocardioides sp. JS614 Oceanobacillus iheyensis HTE831 Sanguibacter keddieii DSM 10542 Stackebrandtia nassauensis DSM 44728 Streptosporangium roseum DSM 43021 Thermoanaerobacter italicus Ab9 Thermoanaerobacterium thermosaccharolyticum DSM 571 Acidipropionibacterium acidipropionici ATCC 4875 Klebsiella aerogenes KCTC 2190 Aeromonas salmonicida subsp. salmonicida A449 Mannheimia succiniciproducens MBEL55E Candidatus Koribacter versatilis Ellin345 Cellvibrio japonicus Ueda107 Chitinophaga pinensis DSM 2588 Citrobacter rodentium ICC168 Cronobacter turicensis z3032 Dickeya dadantii Ech703 Dickeya zeae Ech1591 Dickeya dadantii Ech586 Dickeya dadantii 3937 Enterobacter sp. 638 Enterobacter cloacae SCF1 Erwinia tasmaniensis Et1/99 Erwinia amylovora CFBP1430 Erwinia billingiae Eb661 Gramella forsetii KT0803 Halorhabdus utahensis DSM 12940 Herpetosiphon aurantiacus DSM 785 Jannaschia sp. CCS1 Klebsiella pneumoniae 342 Leadbetterella byssophila DSM 17132 Leptothrix cholodnii SP-6 Sorangium cellulosum 'So ce 56' Opitutus terrae PB90-1 Pantoea ananatis LMG 20103 Pectobacterium atrosepticum SCRI1043 Pectobacterium carotovorum subsp. carotovorum PC1 Pedobacter heparinus DSM 2366 Saccharophagus degradans 2-40 Salmonella enterica subsp. enterica serovar Paratyphi A str. Shewanella sp. ANA-3 Shewanella sp. W3-18-1 Shigella flexneri 2a str. 301 Shigella boydii Sb227 Shigella boydii CDC 3083-94 Spirochaeta thermophila DSM 6192 Thermotoga petrophila RKU-1 Thermotoga sp. RQ2 Thermotoga neapolitana DSM 4359 Tolumonas auensis DSM 9187 Zunongwangia profunda SM-A87 Atlantibacter hermannii NBRC 105704 Klebsiella michiganensis KCTC 1686 Chania multitudinisentens RB-25 Hungatella hathewayi DSM 13479
L-Lyxose Degradation

Metabolic Reactions

Reactions

This table shows at most 20 reactions. For the full list of associated reactions:

See All Associated Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0018152	L-ribulose 5-phosphate	Xylulose 5-phosphate	L-ribulose-5-phosphate 4-epimerase UlaF	Epimerization	PathBank	31602464
MMDBr0018154	L-Xylulose 5-phosphate	L-ribulose 5-phosphate	L-ribulose-5-phosphate 3-epimerase UlaE	Epimerization	PathBank	31602464
MMDBr0018156	L-ribulose 5-phosphate	Xylulose 5-phosphate	L-ribulose-5-phosphate 4-epimerase SgbE	Epimerization	PathBank	31602464
MMDBr0019368	L-Xylulose 5-phosphate	L-ribulose 5-phosphate	Putative L-ribulose-5-phosphate 3-epimerase SgbU	Epimerization	PathBank	31602464
MMDBr0019371	L-Ribulose	L-ribulose 5-phosphate	Ribulokinase	Phosphorylation	PathBank	31602464

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria/Eubacteria	Proteobacteria	1	Human ; Human feces; Human feces; pleural fluid plaque; bal	Unknown

Exposure Sources

Other Exposures

Source Type	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

21145006

PDB ID

Not Available

ChEBI ID

58226

Food Biomarker Ontology

Not Available

CMMC Knowledgebase

Not Available

General References

Wishart DS, Li C, Marcu A, Badran H, Pon A, Budinski Z, Patron J, Lipton D, Cao X, Oler E, Li K, Paccoud M, Hong C, Guo AC, Chan C, Wei W, Ramirez-Gaona M: PathBank: a comprehensive pathway database for model organisms. Nucleic Acids Res. 2020 Jan 8;48(D1):D470-D478. doi: 10.1093/nar/gkz861. [PubMed:31602464 ]

Showing metabocard for L-ribulose 5-phosphate (MMDBc0032117)

MOL for #<Metabolite:0x00005624c9e07830>

3D MOL for #<Metabolite:0x00005624c9e07830>

3D SDF for #<Metabolite:0x00005624c9e07830>

3D-SDF for #<Metabolite:0x00005624c9e07830>

PDB for #<Metabolite:0x00005624c9e07830>

3D PDB for #<Metabolite:0x00005624c9e07830>

SMILES for #<Metabolite:0x00005624c9e07830>

INCHI for #<Metabolite:0x00005624c9e07830>

Structure for #<Metabolite:0x00005624c9e07830>

3D Structure for #<Metabolite:0x00005624c9e07830>